Mercurial > repos > fubar > jbrowse2
view x/static/js/9088.9fbbeb5c.chunk.js.map @ 125:49f3d3878413 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
| author | fubar |
|---|---|
| date | Sat, 05 Oct 2024 23:58:05 +0000 |
| parents | |
| children |
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Math.max(0, Math.min(1, x)) : x));\n }\n\n scale.domain = function(_) {\n return arguments.length ? ([x0, x1] = _, t0 = transform(x0 = +x0), t1 = transform(x1 = +x1), k10 = t0 === t1 ? 0 : 1 / (t1 - t0), scale) : [x0, x1];\n };\n\n scale.clamp = function(_) {\n return arguments.length ? (clamp = !!_, scale) : clamp;\n };\n\n scale.interpolator = function(_) {\n return arguments.length ? (interpolator = _, scale) : interpolator;\n };\n\n function range(interpolate) {\n return function(_) {\n var r0, r1;\n return arguments.length ? ([r0, r1] = _, interpolator = interpolate(r0, r1), scale) : [interpolator(0), interpolator(1)];\n };\n }\n\n scale.range = range(interpolate);\n\n scale.rangeRound = range(interpolateRound);\n\n scale.unknown = function(_) {\n return arguments.length ? (unknown = _, scale) : unknown;\n };\n\n return function(t) {\n transform = t, t0 = t(x0), t1 = t(x1), k10 = t0 === t1 ? 0 : 1 / (t1 - t0);\n return scale;\n };\n}\n\nexport function copy(source, target) {\n return target\n .domain(source.domain())\n .interpolator(source.interpolator())\n .clamp(source.clamp())\n .unknown(source.unknown());\n}\n\nexport default function sequential() {\n var scale = linearish(transformer()(identity));\n\n scale.copy = function() {\n return copy(scale, sequential());\n };\n\n return initInterpolator.apply(scale, arguments);\n}\n\nexport function sequentialLog() {\n var scale = loggish(transformer()).domain([1, 10]);\n\n scale.copy = function() {\n return copy(scale, sequentialLog()).base(scale.base());\n };\n\n return initInterpolator.apply(scale, arguments);\n}\n\nexport function sequentialSymlog() {\n var scale = symlogish(transformer());\n\n scale.copy = function() {\n return copy(scale, sequentialSymlog()).constant(scale.constant());\n };\n\n return initInterpolator.apply(scale, arguments);\n}\n\nexport function sequentialPow() {\n var scale = powish(transformer());\n\n scale.copy = function() {\n return copy(scale, sequentialPow()).exponent(scale.exponent());\n };\n\n return initInterpolator.apply(scale, arguments);\n}\n\nexport function sequentialSqrt() {\n return sequentialPow.apply(null, arguments).exponent(0.5);\n}\n","// @ts-nocheck\n// vendored from\n// https://github.com/d3/d3-scale-chromatic/blob/main/src/sequential-multi/viridis.js,\n// license reproduced below\n//\n// Copyright 2010-2024 Mike Bostock\n\n// Permission to use, copy, modify, and/or distribute this software for any purpose\n// with or without fee is hereby granted, provided that the above copyright notice\n// and this permission notice appear in all copies.\n//\n// THE SOFTWARE IS PROVIDED \"AS IS\" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH\n// REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND\n// FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT,\n// INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS\n// OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER\n// TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF\n// THIS SOFTWARE.\nfunction colors(specifier) {\n const n = (specifier.length / 6) | 0\n const colors = new Array(n)\n let i = 0\n while (i < n) {\n colors[i] = `#${specifier.slice(i * 6, ++i * 6)}`\n }\n return colors\n}\n\nfunction ramp(range) {\n const n = range.length\n return function (t) {\n return range[Math.max(0, Math.min(n - 1, Math.floor(t * n)))]\n }\n}\n\nexport default ramp(\n colors(\n '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',\n ),\n)\n","import { RenderArgs as ServerSideRenderArgs } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType'\nimport { Region } from '@jbrowse/core/util/types'\nimport { abortBreakPoint } from '@jbrowse/core/util'\nimport { readConfObject } from '@jbrowse/core/configuration'\nimport { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter'\nimport { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache'\nimport { colord } from '@jbrowse/core/util/colord'\nimport {\n scaleSequential,\n scaleSequentialLog,\n} from '@mui/x-charts-vendor/d3-scale'\nimport { interpolateRgbBasis } from '@mui/x-charts-vendor/d3-interpolate'\nimport PluginManager from '@jbrowse/core/PluginManager'\n\nimport interpolateViridis from './viridis'\nimport { RenderArgsDeserializedWithFeatures } from './HicRenderer'\n\ninterface HicDataAdapter extends BaseFeatureDataAdapter {\n getResolution: (bp: number) => Promise<number>\n}\n\nexport interface RenderArgs extends ServerSideRenderArgs {\n regions: Region[]\n}\n\nexport async function makeImageData(\n ctx: CanvasRenderingContext2D,\n props: RenderArgsDeserializedWithFeatures & { pluginManager: PluginManager },\n) {\n const {\n features,\n config,\n bpPerPx,\n signal,\n resolution,\n sessionId,\n adapterConfig,\n useLogScale,\n colorScheme,\n regions,\n pluginManager,\n } = props\n const region = regions[0]!\n const { dataAdapter } = await getAdapter(\n pluginManager,\n sessionId,\n adapterConfig,\n )\n const res = await (dataAdapter as HicDataAdapter).getResolution(\n bpPerPx / resolution,\n )\n\n const width = (region.end - region.start) / bpPerPx\n const w = res / (bpPerPx * Math.sqrt(2))\n const baseColor = colord(readConfObject(config, 'baseColor'))\n const offset = Math.floor(region.start / res)\n if (features.length) {\n let maxScore = 0\n let minBin = 0\n let maxBin = 0\n await abortBreakPoint(signal)\n for (const { bin1, bin2, counts } of features) {\n maxScore = Math.max(counts, maxScore)\n minBin = Math.min(Math.min(bin1, bin2), minBin)\n maxBin = Math.max(Math.max(bin1, bin2), maxBin)\n }\n await abortBreakPoint(signal)\n const colorSchemes = {\n juicebox: ['rgba(0,0,0,0)', 'red'],\n fall: interpolateRgbBasis([\n 'rgb(255, 255, 255)',\n 'rgb(255, 255, 204)',\n 'rgb(255, 237, 160)',\n 'rgb(254, 217, 118)',\n 'rgb(254, 178, 76)',\n 'rgb(253, 141, 60)',\n 'rgb(252, 78, 42)',\n 'rgb(227, 26, 28)',\n 'rgb(189, 0, 38)',\n 'rgb(128, 0, 38)',\n 'rgb(0, 0, 0)',\n ]),\n viridis: interpolateViridis,\n }\n const m = useLogScale ? maxScore : maxScore / 20\n\n // @ts-expect-error\n const x1 = colorSchemes[colorScheme] || colorSchemes.juicebox\n const scale = useLogScale\n ? scaleSequentialLog(x1).domain([1, m])\n : scaleSequential(x1).domain([0, m])\n ctx.save()\n\n if (region.reversed === true) {\n ctx.scale(-1, 1)\n ctx.translate(-width, 0)\n }\n ctx.rotate(-Math.PI / 4)\n let start = Date.now()\n for (const { bin1, bin2, counts } of features) {\n ctx.fillStyle = readConfObject(config, 'color', {\n count: counts,\n maxScore,\n baseColor,\n scale,\n useLogScale,\n })\n ctx.fillRect((bin1 - offset) * w, (bin2 - offset) * w, w, w)\n if (+Date.now() - start > 400) {\n await abortBreakPoint(signal)\n start = +Date.now()\n }\n }\n ctx.restore()\n }\n return undefined\n}\n"],"names":["transformer","t0","t1","k10","transform","unknown","x0","x1","interpolator","clamp","scale","x","isNaN","Math","max","min","range","interpolate","_","r0","r1","arguments","length","domain","rangeRound","t","copy","source","target","sequential","linear","init","apply","sequentialLog","log","base","n","floor","specifier","colors","Array","i","slice","async","makeImageData","ctx","props","features","config","bpPerPx","signal","resolution","sessionId","adapterConfig","useLogScale","colorScheme","regions","pluginManager","region","dataAdapter","getAdapter","res","getResolution","width","end","start","w","sqrt","baseColor","colord","readConfObject","offset","maxScore","minBin","maxBin","abortBreakPoint","bin1","bin2","counts","colorSchemes","juicebox","fall","interpolateRgbBasis","viridis","interpolateViridis","m","scaleSequentialLog","scaleSequential","save","reversed","translate","rotate","PI","Date","now","fillStyle","count","fillRect","restore"],"sourceRoot":""}