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view test-data/maf/merlin.maf @ 93:4c517a0041a8 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit aeef2fbc0f90a9366851941ff51baeba410c56e4
author fubar
date Wed, 24 Apr 2024 02:29:32 +0000
parents e7a6f7a7148d
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##maf version=1 scoring=lastz.v1.04.22
# lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple
#
# hsp_threshold = 3000
# gapped_threshold = 3000
# x_drop = 910
# y_drop = 9400
# gap_open_penalty = 400
# gap_extend_penalty = 30
# A C G T
# A 91 -114 -31 -123
# C -114 100 -125 -31
# G -31 -125 100 -114
# T -123 -31 -114 91

a score=5613
s Merlin.Merlin 960 60 + 172788 ATTTTCTGTAGCAGTTCAAACTGTAGAAAATGATGAAGTTATTTTAACTTTACCAGCTTT
s merlin1.Merlin 960 60 + 60 ATTTTCTGTAGCAGTTCCAAACTGTAGAAAATGATGAAGTTATTTTAACTTACCAGCTTT

a score=5667
s Merlin.Merlin 1020 60 + 172788 CGTAATTTTCCGCAAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCCAAGTA
s merlin2.Merlin 0 60 + 60 CGTAATTTTCCGCAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCACAAGTA

a score=5721
s Merlin.Merlin 1080 60 + 172788 TTTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGACAACCCTCCAGCAGCTCCTC
s merlin3.Merlin 100 160 + 60 TTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGTACAACCCTCCAGCAGCTCCTC

a score=5613
s Merlin.Merlin 1140 60 + 172788 CAAGTCTAGATAATCTACTTAAACTTCCATTAAGAGACATTTCACTATTAATTCCAGTTA
s merlin4.Merlin 200 260 + 60 CAAGTCTAGGATAATCTACTTAAACTTCCATTAAAGACATTTCACTATTAATTCCAGTTA

a score=5703
s Merlin.Merlin 1200 60 + 172788 TAGAATTAACAGCTCTATCTTCAATCCAATCAAGAGCAGCTTGACGTCCAACAGCACCCG
s merlin5.Merlin 300 360 + 60 TAGAATTAACAGCTCTATTCAATCCAATCCCAAGAGCAGCTTGACGTCCAACAGCACCCG

a score=5649
s Merlin.Merlin 1260 60 + 172788 TTTGCATTACTCTGTAAGCAAATGTAACATCGAAAACCGCAATTTGGTTATCTCCTTCAT
s merlin6.Merlin 0 60 + 60 TTTGCATTACTCTGTAAGCAATGTAACATCGAAAACCGCAATTATGGTTATCTCCTTCAT