Mercurial > repos > fubar > jbrowse2

view jb2_urlconf.py @ 96:5ef1ba2031f2 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 8e40627c0488fc1adf2b7d1e331ca65f533038b2
author fubar
date Thu, 25 Apr 2024 07:25:52 +0000
parents 94264fe60478
children
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inconf = open("config.json", "r").readlines()
with open("config.json.local", "w") as bak:
    bak.write("".join(inconf))
urlbase = "https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/hum/"
utag = '"uri":'
for i, row in enumerate(inconf):
    ispath = False
    if row.strip().startswith(utag):
        ispath = True
        parth = row.split(utag)[1].strip().replace('"', "").replace("'", "")
        inconf[i] = '%s "%s%s"' % (utag, urlbase, parth)
with open("config.json", "w") as outconf:
    outconf.write("".join(inconf))