Mercurial > repos > fubar > jbrowse2
view x/build_env_setup.sh @ 131:69c6ea16c148 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 3cf9ec268c0719caf060b7d6bf5c0159909c348a
author | fubar |
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date | Sat, 12 Oct 2024 23:11:22 +0000 |
parents | 49f3d3878413 |
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export CONDA_BUILD="1" export PYTHONNOUSERSITE="1" export CONDA_DEFAULT_ENV="/home/ross/miniconda3/envs/mulled-v1-ead19212d339c2197ed3232dcd8366627d23ccb1cf4fb8ae3186545effdca881" export ARCH="64" export PREFIX="/home/ross/miniconda3/envs/mulled-v1-ead19212d339c2197ed3232dcd8366627d23ccb1cf4fb8ae3186545effdca881" export BUILD_PREFIX="/opt/conda/conda-bld/jbrowse2_1726856947541/_build_env" export SYS_PREFIX="/opt/conda" export SYS_PYTHON="/opt/conda/bin/python" export SUBDIR="linux-64" export build_platform="linux-64" export SRC_DIR="/opt/conda/conda-bld/jbrowse2_1726856947541/work" export ROOT="/opt/conda" export CONDA_PY="312" export PY3K="1" export PY_VER="3.12" export STDLIB_DIR="/home/ross/miniconda3/envs/mulled-v1-ead19212d339c2197ed3232dcd8366627d23ccb1cf4fb8ae3186545effdca881/lib/python3.12" export SP_DIR="/home/ross/miniconda3/envs/mulled-v1-ead19212d339c2197ed3232dcd8366627d23ccb1cf4fb8ae3186545effdca881/lib/python3.12/site-packages" export NPY_VER="1.26" export CONDA_NPY="126" export NPY_DISTUTILS_APPEND_FLAGS="1" export PERL_VER="5.32" export CONDA_PERL="5.32" export LUA_VER="5" export CONDA_LUA="5" export R_VER="4.3.*" export CONDA_R="4.3.*" export PKG_NAME="jbrowse2" export PKG_VERSION="2.15.4" export PKG_BUILDNUM="0" export PKG_BUILD_STRING="placeholder" export PKG_HASH="1234567" export RECIPE_DIR="/opt/recipe" export CPU_COUNT="2" export LANG="C.UTF-8" export SHLIB_EXT=".so" export PATH="/opt/conda/conda-bld/jbrowse2_1726856947541/_build_env/bin:/home/ross/miniconda3/envs/mulled-v1-ead19212d339c2197ed3232dcd8366627d23ccb1cf4fb8ae3186545effdca881/bin:/opt/conda/bin:/opt/conda/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/conda/bin" export HOME="/home/conda" export PKG_CONFIG_PATH="/home/ross/miniconda3/envs/mulled-v1-ead19212d339c2197ed3232dcd8366627d23ccb1cf4fb8ae3186545effdca881/lib/pkgconfig" export CMAKE_GENERATOR="Unix Makefiles" export LD_RUN_PATH="/home/ross/miniconda3/envs/mulled-v1-ead19212d339c2197ed3232dcd8366627d23ccb1cf4fb8ae3186545effdca881/lib" export BUILD="x86_64-conda_cos6-linux-gnu" export zip_keys="[['c_compiler_version', 'cxx_compiler_version', 'fortran_compiler_version'], ['arrow_cpp', 'libarrow', 'libarrow_all'], ['python', 'numpy', 'python_impl'], ['c_stdlib_version', 'cdt_name']]" export pin_run_as_build="OrderedDict([('python', {'min_pin': 'x.x', 'max_pin': 'x.x'}), ('r-base', {'max_pin': 'x.x', 'min_pin': 'x.x'}), ('flann', {'max_pin': 'x.x.x'}), ('graphviz', {'max_pin': 'x'}), ('libsvm', {'max_pin': 'x'}), ('netcdf-cxx4', {'max_pin': 'x.x'}), ('occt', {'max_pin': 'x.x'}), ('poppler', {'max_pin': 'x.x'}), ('vlfeat', {'max_pin': 'x.x.x'})])" export extend_keys="{'ignore_version', 'pin_run_as_build', 'extend_keys', 'ignore_build_only_deps'}" export ignore_build_only_deps="{'python', 'numpy'}" export libyarp="3.9.0" export libintervalxt="3" export tk="8.6" export libmatio="1.5.26" export qt="5.15" export coin_or_cgl="0.60" export coincbc="2.10" export pixman="0" export libhugetlbfs="2" export libopencv="4.9.0" export ccr="1.3" export superlu_dist="8" export libsoup="3" export pyqtwebengine="5.15" export hdf4="4.2.15" export gst_plugins_base="1.22" export eclib="20231211" export google_cloud_cpp_common="0.25.0" export dcap="2.47" export slepc4py="3.21" export scotch="7.0.4" export snappy="1.2" export suitesparse="5" export libblitz="1.0.2" export libabseil_static="20220623.0" export libflatsurf="3" export pulseaudio="17.0" export libcblas="3.9 *netlib" export libgoogle_cloud_dlp_devel="2.24" export rocksdb="9.1" export _libgcc_mutex="0.1 conda_forge" export gnuradio_core="3.10.10" export librdkafka="2.4" export libdap4="3.20.6" export aws_c_auth="0.7.22" export channel_targets="bioconda main" export libhwloc="2.10.0" export pyqt="5.15" export cpu_optimization_target="nocona" export assimp="5.3.1" export mpfr="4" export pcre2="10.43" export gsl="2.7" export ptscotch="7.0.4" export xrootd="5" export arpack="3.8" export cxx_compiler="gxx" export sdl2_net="2" export target_goos="linux" export elfutils="0.191" export libhwy="1.1" export uhd="4.6.0" export petsc="3.21" export pulseaudio_daemon="17.0" export libeantic="2" export libopentelemetry_cpp="1.15" export bamtools="2.5.2" export openblas="0.3.*" export icu="73" export libiio="0" export x264="1!164.*" export mpich="4" export pybind11_abi="4" export nettle="3.9" export libwebp_base="1" export abseil_cpp="20220623.0" export thrift_cpp="0.18.1" export openmpi="4" export coin_or_cbc="2.10" export openslide="4" export libscotch="7.0.4" export sdl2_mixer="2" export fontconfig="2" export libgoogle_cloud_oauth2_devel="2.24" export grpc_cpp="1.52" export libmatio_cpp="0.2.5" export libboost_python_devel="1.82" export openh264="2.4.1" export pcre="8" export vlfeat="0.9.21" export mumps_seq="5.7.1" export gct="6.2.1705709074" export openssl="3" export dbus="1" export googleapis_cpp="0.10" export xz="5" export coin_or_clp="1.17" export libcurl="8" export aws_checksums="0.1.18" export libtensorflow="2.15" export libidn2="2" export aws_c_common="0.9.19" export google_cloud_cpp="2.24" export libsqlite="3" export libthrift="0.20.0" export ucx="1.16.0" export re2="2023.09.01" export c_compiler="gcc" export zlib="1.2" export gnutls="3.7" export aws_sdk_cpp="1.11.267" export mpg123="1.32" export libevent="2.1.12" export go_compiler="go-nocgo" export libarchive="3.7" export msgpack_c="6" export ntl="11.4.3" export davix="0.8" export libev="4.33" export ruby="2.6" export glog="0.6" export libopenvino_dev="2024.1.0" export exiv2="0.28" export libpng="1.6" export ncurses="6" export lz4_c="1.9.3" export libzip="1" export sqlite="3" export postgresql_plpython="16" export libprotobuf="4.25.3" export gdal="3.8" export libcint="5.5" export geos="3.12.1" export qt6_main="6.7" export libgdal="3.8" export occt="7.7.2" export lcms2="2" export librsvg="2" export libgoogle_cloud_bigquery_devel="2.24" export libffi="3.4" export tinyxml2="10" export zstd="1.5" export fmt="10" export libframel="8.41" export libgoogle_cloud_dialogflow_cx_devel="2.24" export jsoncpp="1.9.5" export libgoogle_cloud_dialogflow_es_devel="2.24" export target_platform="linux-64" export gflags="2.2" export aws_c_sdkutils="0.1.16" export aws_c_http="0.8.1" export netcdf_cxx4="4.3" export libjpeg_turbo="3" export sox="14.4.2" export VERBOSE_CM="VERBOSE=1" export jasper="4" export coin_or_osi="0.108" export spdlog="1.12" export libgoogle_cloud_automl_devel="2.24" export libtorch="2.1" export libgrpc="1.62" export libgit2="1.8" export readline="8" export jpeg="9" export libmicrohttpd="1.0" export pari="2.15.* *_pthread" export libv8="8.9.83" export cuda_compiler_version="None" export openexr="3.2" export nspr="4" export libssh2="1" export urdfdom="4.0" export tiledb="2.23" export aws_c_compression="0.2.18" export coin_or_utils="2.11" export zeromq="4.3.5" export libgoogle_cloud_policytroubleshooter_devel="2.24" export metis="5.1.0" export libraw="0.21" export libpq="16" export mimalloc="2.1.7" export svt_av1="2.1.0" export libpcap="1.10" export curl="8" export lzo="2" export idyntree="12" export x265="3.5" export c_blosc2="2.14" export libiconv="1" export slepc="3.21" export libflint="2.9" export libgoogle_cloud_compute_devel="2.24" export libvips="8" export nlopt="2.7" export gstreamer="1.22" export libtensorflow_cc="2.15" export cutensor="2" export aws_c_s3="0.5.9" export c_stdlib="sysroot" export libode="0.16.2" export zlib_ng="2.0" export geotiff="1.7.1" export libsecret="0.18" export libabseil="20240116" export hdf5="1.14.3" export libmed="4.1" export netcdf_fortran="4.6" export libptscotch="7.0.4" export libcrc32c="1.1" export glew="2.1" export kealib="1.5" export sdl2_image="2" export channel_sources="conda-forge,bioconda" export harfbuzz="8" export nodejs="18" export libduckdb_devel="0.9.2" export pytorch="2.1" export pulseaudio_client="17.0" export aws_crt_cpp="0.26.9" export pango="1.50" export alsa_lib="1.2" export bzip2="1" export tbb="2021" export root_base="6.28.10" export libnetcdf="4.9.2" export cran_mirror="https://cran.r-project.org" export wxwidgets="3.2" export orc="2.0.1" export singular="4.3.2.p8" export libspatialindex="1.9.3" export p11_kit="0.24" export cuda_compiler="None" export log4cxx="1.2.0" export cuda_compiler_version_min="11.8" export msgpack_cxx="6" export libxml2="2" export fftw="3" export libuuid="2" export wcslib="8" export VERBOSE_AT="V=1" export cudnn="8" export mkl="2023" export ldas_tools_framecpp="2.9" export libgoogle_cloud_aiplatform_devel="2.24" export pyqtchart="5.15" export qtkeychain="0.14" export blas_impl="blis" export nss="3" export gdk_pixbuf="2" export gf2x="1.3" export tensorflow="2.15" export liblapacke="3.9 *netlib" export libgoogle_cloud_spanner_devel="2.24" export pcl="1.14.0" export krb5="1.21" export libsvm="332" export libexactreal="4" export cgo_compiler="go-cgo" export petsc4py="3.21" export poppler="24.04" export aws_c_event_stream="0.4.2" export vtk="9.2.6" export libkml="1.3" export libssh="0.10" export flann="1.9.2" export gfal2="2.22" export cfitsio="4.3.0" export s2n="1.4.15" export rdma_core="51" export json_c="0.17" export zfp="1.0" export libgoogle_cloud_devel="2.24" export giflib="5.2" export soapysdr="0.8" export libblas="3.9 *netlib" export openjpeg="2" export mkl_devel="2023" export imath="3.1.11" export glib="2" export libboost_devel="1.82" export target_gobin="${PREFIX}/bin/" export libsentencepiece="0.2.0" export pugixml="1.14" export antic="0.2" export libgoogle_cloud_bigtable_devel="2.24" export sdl2="2" export ipopt="3.14.16" export mumps_mpi="5.7.1" export qt_main="5.15" export c_ares="1" export volk="3.1" export libgoogle_cloud_pubsub_devel="2.24" export aws_c_cal="0.6.14" export ffmpeg="6" export libunwind="1.6" export gmp="6" export sdl2_ttf="2" export capnproto="1.0.2" export isl="0.26" export libgoogle_cloud_iam_devel="2.24" export libaec="1" export tbb_devel="2021" export xerces_c="3.2" export liblapack="3.9 *netlib" export cairo="1" export libtiff="4.6" export aws_c_io="0.14.8" export dav1d="1.2.1" export lerc="4" export target_goarch="amd64" export proj="9.3.1" export arb="2.23" export aws_c_mqtt="0.10.4" export libgoogle_cloud_speech_devel="2.24" export expat="2" export bullet_cpp="3.25" export srm_ifce="1.24.6" export libgoogle_cloud_storage_devel="2.24" export libavif="1" export postgresql="16" export glpk="5.0" export graphviz="9" export lmdb="0.9.29" export flatbuffers="24.3.25" export libxsmm="1" export freetype="2" export console_bridge="1.0" export libgoogle_cloud="2.24" export aom="3.8" export rust_compiler="rust" export libgoogle_cloud_all_devel="2.24" export libdeflate="1.20" export nccl="2" export libgoogle_cloud_discoveryengine_devel="2.24" export attr="2.5" export gsoap="2.8.123" export starlink_ast="9.2.7" export fortran_compiler="gfortran" export r_base="4.3.*" export libwebp="1" export libsndfile="1.2" export poco="1.13.3" export libosqp="0.6.3" export arrow_cpp="15" export libarrow="15" export libarrow_all="15" export python_impl="cpython" export c_stdlib_version="2.17" export cdt_name="cos6" export c_compiler_version="12" export cxx_compiler_version="12" export fortran_compiler_version="12" export CONDA_BUILD_STATE="BUILD" export PIP_NO_BUILD_ISOLATION="False" export PIP_NO_DEPENDENCIES="True" export PIP_IGNORE_INSTALLED="True" export PIP_CACHE_DIR="/opt/conda/conda-bld/jbrowse2_1726856947541/pip_cache" export PIP_NO_INDEX="True" eval "$('/opt/conda/bin/python' -m conda shell.bash hook)" conda activate "/home/ross/miniconda3/envs/mulled-v1-ead19212d339c2197ed3232dcd8366627d23ccb1cf4fb8ae3186545effdca881" conda activate --stack "/opt/conda/conda-bld/jbrowse2_1726856947541/_build_env"