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React from 'react'\nimport { makeStyles } from 'tss-react/mui'\n\nconst useStyles = makeStyles()(theme => ({\n  table: {\n    border: '1px solid #888',\n    margin: theme.spacing(4),\n    '& td': {\n      padding: theme.spacing(1),\n    },\n  },\n}))\n\nexport default function ModificationTable({\n  modifications,\n}: {\n  modifications: [string, string | undefined][]\n}) {\n  const { classes } = useStyles()\n  return (\n    <table className={classes.table}>\n      <tbody>\n        {modifications.map(([key, value]) => (\n          <tr key={key}>\n            <td>{key}</td>\n            <td>{value}</td>\n            <td\n              style={{\n                width: '1em',\n                background: value,\n              }}\n            />\n          </tr>\n        ))}\n      </tbody>\n    </table>\n  )\n}\n","import React from 'react'\nimport { observer } from 'mobx-react'\nimport { ObservableMap } from 'mobx'\nimport {\n  Button,\n  CircularProgress,\n  DialogActions,\n  DialogContent,\n  Typography,\n} from '@mui/material'\nimport { Dialog } from '@jbrowse/core/ui'\nimport ModificationTable from './ModificationsTable'\n\nconst ColorByModificationsDialog = observer(function ({\n  model,\n  handleClose,\n}: {\n  model: {\n    setColorScheme: (arg: { type: string }) => void\n    modificationTagMap: ObservableMap<string, string>\n    colorBy?: { type: string }\n  }\n  handleClose: () => void\n}) {\n  const { colorBy, modificationTagMap } = model\n\n  const modifications = [...modificationTagMap.entries()]\n\n  return (\n    <Dialog open onClose={handleClose} title=\"Color by modifications\">\n      <DialogContent>\n        <Typography>\n          You can choose to color the modifications in the BAM/CRAM MM/ML\n          specification using this dialog. Choosing modifications colors the\n          modified positions and can color multiple modification types. Choosing\n          the methylation setting colors methylated and unmethylated CpG.\n        </Typography>\n        <Typography>\n          Note: you can revisit this dialog to see the current mapping of colors\n          to modification type for the modification coloring mode\n        </Typography>\n        <div style={{ margin: 20 }}>\n          {colorBy?.type === 'modifications' ? (\n            <div>\n              {modifications.length ? (\n                <>\n                  Current modification-type-to-color mapping\n                  <ModificationTable\n                    modifications={[...modificationTagMap.entries()]}\n                  />\n                </>\n              ) : (\n                <>\n                  <Typography>\n                    Note: color by modifications is already enabled. Loading\n                    current modifications...\n                  </Typography>\n                  <CircularProgress size={15} />\n                </>\n              )}\n            </div>\n          ) : null}\n          {colorBy?.type === 'methylation' ? (\n            <ModificationTable\n              modifications={[\n                ['methylated', 'red'],\n                ['unmethylated', 'blue'],\n              ]}\n            />\n          ) : null}\n        </div>\n        <DialogActions>\n          <Button\n            variant=\"contained\"\n            onClick={() => {\n              model.setColorScheme({ type: 'modifications' })\n              handleClose()\n            }}\n          >\n            Modifications\n          </Button>\n          <Button\n            variant=\"contained\"\n            onClick={() => {\n              model.setColorScheme({ type: 'methylation' })\n              handleClose()\n            }}\n          >\n            Methylation\n          </Button>\n          <Button\n            variant=\"contained\"\n            color=\"secondary\"\n            onClick={() => {\n              handleClose()\n            }}\n          >\n            Cancel\n          </Button>\n        </DialogActions>\n      </DialogContent>\n    </Dialog>\n  )\n})\n\nexport default ColorByModificationsDialog\n","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { keyframes, css, styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { getCircularProgressUtilityClass } from \"./circularProgressClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst SIZE = 44;\nconst circularRotateKeyframe = keyframes`\n  0% {\n    transform: rotate(0deg);\n  }\n\n  100% {\n    transform: rotate(360deg);\n  }\n`;\nconst circularDashKeyframe = keyframes`\n  0% {\n    stroke-dasharray: 1px, 200px;\n    stroke-dashoffset: 0;\n  }\n\n  50% {\n    stroke-dasharray: 100px, 200px;\n    stroke-dashoffset: -15px;\n  }\n\n  100% {\n    stroke-dasharray: 100px, 200px;\n    stroke-dashoffset: -125px;\n  }\n`;\n\n// This implementation is for supporting both Styled-components v4+ and Pigment CSS.\n// A global animation has to be created here for Styled-components v4+ (https://github.com/styled-components/styled-components/blob/main/packages/styled-components/src/utils/errors.md#12).\n// which can be done by checking typeof indeterminate1Keyframe !== 'string' (at runtime, Pigment CSS transform keyframes`` to a string).\nconst rotateAnimation = typeof circularRotateKeyframe !== 'string' ? css`\n        animation: ${circularRotateKeyframe} 1.4s linear infinite;\n      ` : null;\nconst dashAnimation = typeof circularDashKeyframe !== 'string' ? css`\n        animation: ${circularDashKeyframe} 1.4s ease-in-out infinite;\n      ` : null;\nconst useUtilityClasses = ownerState => {\n  const {\n    classes,\n    variant,\n    color,\n    disableShrink\n  } = ownerState;\n  const slots = {\n    root: ['root', variant, `color${capitalize(color)}`],\n    svg: ['svg'],\n    circle: ['circle', `circle${capitalize(variant)}`, disableShrink && 'circleDisableShrink']\n  };\n  return composeClasses(slots, getCircularProgressUtilityClass, classes);\n};\nconst CircularProgressRoot = styled('span', {\n  name: 'MuiCircularProgress',\n  slot: 'Root',\n  overridesResolver: (props, styles) => {\n    const {\n      ownerState\n    } = props;\n    return [styles.root, styles[ownerState.variant], styles[`color${capitalize(ownerState.color)}`]];\n  }\n})(memoTheme(({\n  theme\n}) => ({\n  display: 'inline-block',\n  variants: [{\n    props: {\n      variant: 'determinate'\n    },\n    style: {\n      transition: theme.transitions.create('transform')\n    }\n  }, {\n    props: {\n      variant: 'indeterminate'\n    },\n    style: rotateAnimation || {\n      animation: `${circularRotateKeyframe} 1.4s linear infinite`\n    }\n  }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n    props: {\n      color\n    },\n    style: {\n      color: (theme.vars || theme).palette[color].main\n    }\n  }))]\n})));\nconst CircularProgressSVG = styled('svg', {\n  name: 'MuiCircularProgress',\n  slot: 'Svg',\n  overridesResolver: (props, styles) => styles.svg\n})({\n  display: 'block' // Keeps the progress centered\n});\nconst CircularProgressCircle = styled('circle', {\n  name: 'MuiCircularProgress',\n  slot: 'Circle',\n  overridesResolver: (props, styles) => {\n    const {\n      ownerState\n    } = props;\n    return [styles.circle, styles[`circle${capitalize(ownerState.variant)}`], ownerState.disableShrink && styles.circleDisableShrink];\n  }\n})(memoTheme(({\n  theme\n}) => ({\n  stroke: 'currentColor',\n  variants: [{\n    props: {\n      variant: 'determinate'\n    },\n    style: {\n      transition: theme.transitions.create('stroke-dashoffset')\n    }\n  }, {\n    props: {\n      variant: 'indeterminate'\n    },\n    style: {\n      // Some default value that looks fine waiting for the animation to kicks in.\n      strokeDasharray: '80px, 200px',\n      strokeDashoffset: 0 // Add the unit to fix a Edge 16 and below bug.\n    }\n  }, {\n    props: ({\n      ownerState\n    }) => ownerState.variant === 'indeterminate' && !ownerState.disableShrink,\n    style: dashAnimation || {\n      // At runtime for Pigment CSS, `bufferAnimation` will be null and the generated keyframe will be used.\n      animation: `${circularDashKeyframe} 1.4s ease-in-out infinite`\n    }\n  }]\n})));\n\n/**\n * ## ARIA\n *\n * If the progress bar is describing the loading progress of a particular region of a page,\n * you should use `aria-describedby` to point to the progress bar, and set the `aria-busy`\n * attribute to `true` on that region until it has finished loading.\n */\nconst CircularProgress = /*#__PURE__*/React.forwardRef(function CircularProgress(inProps, ref) {\n  const props = useDefaultProps({\n    props: inProps,\n    name: 'MuiCircularProgress'\n  });\n  const {\n    className,\n    color = 'primary',\n    disableShrink = false,\n    size = 40,\n    style,\n    thickness = 3.6,\n    value = 0,\n    variant = 'indeterminate',\n    ...other\n  } = props;\n  const ownerState = {\n    ...props,\n    color,\n    disableShrink,\n    size,\n    thickness,\n    value,\n    variant\n  };\n  const classes = useUtilityClasses(ownerState);\n  const circleStyle = {};\n  const rootStyle = {};\n  const rootProps = {};\n  if (variant === 'determinate') {\n    const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n    circleStyle.strokeDasharray = circumference.toFixed(3);\n    rootProps['aria-valuenow'] = Math.round(value);\n    circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n    rootStyle.transform = 'rotate(-90deg)';\n  }\n  return /*#__PURE__*/_jsx(CircularProgressRoot, {\n    className: clsx(classes.root, className),\n    style: {\n      width: size,\n      height: size,\n      ...rootStyle,\n      ...style\n    },\n    ownerState: ownerState,\n    ref: ref,\n    role: \"progressbar\",\n    ...rootProps,\n    ...other,\n    children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n      className: classes.svg,\n      ownerState: ownerState,\n      viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n      children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n        className: classes.circle,\n        style: circleStyle,\n        ownerState: ownerState,\n        cx: SIZE,\n        cy: SIZE,\n        r: (SIZE - thickness) / 2,\n        fill: \"none\",\n        strokeWidth: thickness\n      })\n    })\n  });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n  // ┌────────────────────────────── Warning ──────────────────────────────┐\n  // │ These PropTypes are generated from the TypeScript type definitions. │\n  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │\n  // └─────────────────────────────────────────────────────────────────────┘\n  /**\n   * Override or extend the styles applied to the component.\n   */\n  classes: PropTypes.object,\n  /**\n   * @ignore\n   */\n  className: PropTypes.string,\n  /**\n   * The color of the component.\n   * It supports both default and custom theme colors, which can be added as shown in the\n   * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n   * @default 'primary'\n   */\n  color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n  /**\n   * If `true`, the shrink animation is disabled.\n   * This only works if variant is `indeterminate`.\n   * @default false\n   */\n  disableShrink: chainPropTypes(PropTypes.bool, props => {\n    if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n      return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n    }\n    return null;\n  }),\n  /**\n   * The size of the component.\n   * If using a number, the pixel unit is assumed.\n   * If using a string, you need to provide the CSS unit, for example '3rem'.\n   * @default 40\n   */\n  size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n  /**\n   * @ignore\n   */\n  style: PropTypes.object,\n  /**\n   * The system prop that allows defining system overrides as well as additional CSS styles.\n   */\n  sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n  /**\n   * The thickness of the circle.\n   * @default 3.6\n   */\n  thickness: PropTypes.number,\n  /**\n   * The value of the progress indicator for the determinate variant.\n   * Value between 0 and 100.\n   * @default 0\n   */\n  value: PropTypes.number,\n  /**\n   * The variant to use.\n   * Use indeterminate when there is no progress value.\n   * @default 'indeterminate'\n   */\n  variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n  return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default circularProgressClasses;"],"names":["useStyles","makeStyles","theme","table","border","margin","spacing","padding","ModificationTable","modifications","classes","React","className","map","key","value","style","width","background","observer","model","handleClose","colorBy","modificationTagMap","entries","Dialog","open","onClose","title","DialogContent","Typography","type","length","CircularProgress","size","DialogActions","Button","variant","onClick","setColorScheme","color","circularRotateKeyframe","circularDashKeyframe","rotateAnimation","dashAnimation","CircularProgressRoot","name","slot","overridesResolver","props","styles","ownerState","root","display","variants","transition","transitions","create","animation","Object","palette","filter","vars","main","CircularProgressSVG","svg","CircularProgressCircle","circle","disableShrink","circleDisableShrink","stroke","strokeDasharray","strokeDashoffset","inProps","ref","thickness","other","slots","useUtilityClasses","circleStyle","rootStyle","rootProps","circumference","Math","PI","toFixed","round","transform","height","role","children","viewBox","cx","cy","r","fill","strokeWidth","getCircularProgressUtilityClass"],"sourceRoot":""}