0
+ − 1 <?xml version="1.0"?>
+ − 2 <macros>
+ − 3 <token name="@TOOL_VERSION@">2.10.0</token>
+ − 4 <xml name = "edamInc">
+ − 5 <edam_topics>
+ − 6 <edam_topic>topic_3307</edam_topic>
+ − 7 <edam_topic>topic_0092</edam_topic>
+ − 8 </edam_topics>
+ − 9 <edam_operations>
+ − 10 <edam_operation>operation_0573</edam_operation>
+ − 11 <edam_operation>operation_0564</edam_operation>
+ − 12 </edam_operations>
+ − 13 </xml>
+ − 14 <xml name="requirements">
+ − 15 <requirements>
+ − 16 <requirement type="package" version="@TOOL_VERSION@">jbrowse2</requirement>
+ − 17 <requirement type="package" version="1.82">biopython</requirement>
+ − 18 <requirement type="package" version="0.7.0">bcbio-gff</requirement>
+ − 19 <requirement type="package" version="1.19">samtools</requirement>
+ − 20 <requirement type="package" version="6.0.1">pyyaml</requirement>
+ − 21 <requirement type="package" version="1.11">tabix</requirement>
+ − 22 <requirement type="package" version="4.6.0">findutils</requirement>
+ − 23 <yield/>
+ − 24 </requirements>
+ − 25 </xml>
+ − 26 <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
+ − 27 <token name="@WRAPPER_VERSION@">galaxy0</token>
+ − 28 <token name="@ATTRIBUTION@"><![CDATA[
+ − 29 **Attribution**
+ − 30 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by the IUC
+ − 31 This xml currently fails silently when profile=22.05 is set.
+ − 32 ]]>
+ − 33 </token>
+ − 34 <xml name="track_styling"
+ − 35 token_classname="feature"
+ − 36 token_label="product,name,id"
+ − 37 token_description="note,description"
+ − 38 token_height="10px"
+ − 39 token_maxheight="600">
+ − 40 <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false">
+ − 41 <param label="JBrowse style.className" type="text"
+ − 42 name="style_classname"
+ − 43 value="@CLASSNAME@"
+ − 44 help="Set CSS style.className property"/>
+ − 45 <param label="JBrowse style.label"
+ − 46 type="text"
+ − 47 name="style_label"
+ − 48 value="@LABEL@"
+ − 49 help="Comma-separated list of case-insensitive feature tags to use for showing the feature's label. The first one found will be used. Default 'name,id'" />
+ − 50 <param label="JBrowse style.description"
+ − 51 type="text"
+ − 52 name="style_description"
+ − 53 value="@DESCRIPTION@"
+ − 54 help="Comma-separated list of case-insensitive feature tags to check for the feature's long description. The first one found will be used."/>
+ − 55 <param label="JBrowse style.height"
+ − 56 type="text"
+ − 57 name="style_height"
+ − 58 value="@HEIGHT@"
+ − 59 help="Height in pixels of glyphs. Default value varies from glyph to glyph. Note that the 'compact' displayMode uses style->height * 0.35 so changing style height can adjust the compact visualization."/>
+ − 60 <param label="JBrowse maxHeight"
+ − 61 type="text"
+ − 62 name="max_height"
+ − 63 value="@MAXHEIGHT@"
+ − 64 help="Maximum height that the track is permitted to reach in pixels."/>
+ − 65 </section>
+ − 66 </xml>
+ − 67
+ − 68 <xml name="input_conditional" token_label="Track Data" token_format="data">
+ − 69 <param label="@LABEL@" format="@FORMAT@" name="annotation" type="data" multiple="True"/>
+ − 70 </xml>
+ − 71 <xml name="citations">
+ − 72 <citations>
+ − 73 <citation type="doi">10.1101/gr.094607.109</citation>
+ − 74 </citations>
+ − 75 </xml>
+ − 76 </macros>