Mercurial > repos > fubar > jbrowse2dev
comparison jbrowse2/jbrowse2.xml @ 5:42ca8804cd93 draft
urls in minimal, bloat in complete
| author | fubar |
|---|---|
| date | Thu, 04 Jan 2024 02:18:18 +0000 |
| parents | 52842c3f2dda |
| children | 88b9b105c09b |
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| 4:52842c3f2dda | 5:42ca8804cd93 |
|---|---|
| 210 type="data"> | 210 type="data"> |
| 211 </param> | 211 </param> |
| 212 </when> | 212 </when> |
| 213 </conditional> | 213 </conditional> |
| 214 | 214 |
| 215 <param name="standalone" label="Output JBrowse" type="select"> | 215 <param name="standalone" label="Include all reference and track data in the JBrowse2 object" type="select" |
| 216 <option value="complete">Complete, for viewing and further local development (JBrowse, tools, documentation, etc.) | 216 help="Default is efficient but will not work offline. Including reference sequences, tracks and indexes will allow standalone viewing, at the cost of copying and moving all data" > |
| 217 <option value="complete">Complete: Choose ONLY if need to view offline, or if history cannot be published. WARNING: produces bloated downloads storing redundant copies of all data! | |
| 217 </option> | 218 </option> |
| 218 <option value="minimal" selected="true">Minimal for viewing (Documentation removed) | 219 <option value="minimal" selected="true">Sufficient: Uses URLs for Galaxy data. Requires internet access and a published history to download, share and view remotely. |
| 219 </option> | 220 </option> |
| 220 </param> | 221 </param> |
| 221 | 222 |
| 222 <repeat name="track_groups" title="Track Group"> | 223 <repeat name="track_groups" title="Track Group"> |
| 223 <param label="Track Category" | 224 <param label="Track Category" |
| 313 </repeat> | 314 </repeat> |
| 314 </repeat> | 315 </repeat> |
| 315 <param type="hidden" name="uglyTestingHack" value="" /> | 316 <param type="hidden" name="uglyTestingHack" value="" /> |
| 316 </inputs> | 317 </inputs> |
| 317 <outputs> | 318 <outputs> |
| 318 <data format="html" name="output" label="JBrowse on $on_string - $standalone"/> | 319 <data format="html" name="output" label="JBrowse2 on $reference_genome.genome.element_identifier - $standalone"/> |
| 319 </outputs> | 320 </outputs> |
| 320 <tests> | 321 <tests> |
| 321 <test> | 322 <test> |
| 322 <param name="reference_genome|genome_type_select" value="history"/> | 323 <param name="reference_genome|genome_type_select" value="history"/> |
| 323 <param name="reference_genome|genome" value="merlin.fa"/> | 324 <param name="reference_genome|genome" value="merlin.fa"/> |