Mercurial > repos > fubar > jbrowse2dev

diff jbrowse2/jbrowse2.py @ 8:1e6128ccc82b draft

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Uploaded
author fubar
date Fri, 05 Jan 2024 04:57:29 +0000
parents 234cf4490901
children 6a41f87b5d7f
line wrap: on
line diff
--- a/jbrowse2/jbrowse2.py	Fri Jan 05 04:31:35 2024 +0000
+++ b/jbrowse2/jbrowse2.py	Fri Jan 05 04:57:29 2024 +0000
@@ -179,8 +179,9 @@
             cmd = "bgzip -i -c %s > %s && samtools faidx %s" % (
                 fapath,
                 fadest,
-                fadest,
+                fadest
             )
+            log.info("### cmd = %s" % ' '.join(cmd))
             self.subprocess_popen(cmd)
             adapter = {
                 "type": "BgzipFastaAdapter",