Mercurial > repos > fubar > jbrowse2dev
diff jbrowse2/jbrowse2.xml @ 5:42ca8804cd93 draft
urls in minimal, bloat in complete
author | fubar |
---|---|
date | Thu, 04 Jan 2024 02:18:18 +0000 |
parents | 52842c3f2dda |
children | 88b9b105c09b |
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--- a/jbrowse2/jbrowse2.xml Wed Jan 03 23:27:23 2024 +0000 +++ b/jbrowse2/jbrowse2.xml Thu Jan 04 02:18:18 2024 +0000 @@ -212,10 +212,11 @@ </when> </conditional> - <param name="standalone" label="Output JBrowse" type="select"> - <option value="complete">Complete, for viewing and further local development (JBrowse, tools, documentation, etc.) + <param name="standalone" label="Include all reference and track data in the JBrowse2 object" type="select" + help="Default is efficient but will not work offline. Including reference sequences, tracks and indexes will allow standalone viewing, at the cost of copying and moving all data" > + <option value="complete">Complete: Choose ONLY if need to view offline, or if history cannot be published. WARNING: produces bloated downloads storing redundant copies of all data! </option> - <option value="minimal" selected="true">Minimal for viewing (Documentation removed) + <option value="minimal" selected="true">Sufficient: Uses URLs for Galaxy data. Requires internet access and a published history to download, share and view remotely. </option> </param> @@ -315,7 +316,7 @@ <param type="hidden" name="uglyTestingHack" value="" /> </inputs> <outputs> - <data format="html" name="output" label="JBrowse on $on_string - $standalone"/> + <data format="html" name="output" label="JBrowse2 on $reference_genome.genome.element_identifier - $standalone"/> </outputs> <tests> <test>