diff jbrowse2/jbrowse2.xml @ 5:42ca8804cd93 draft

urls in minimal, bloat in complete
author fubar
date Thu, 04 Jan 2024 02:18:18 +0000
parents 52842c3f2dda
children 88b9b105c09b
line wrap: on
line diff
--- a/jbrowse2/jbrowse2.xml	Wed Jan 03 23:27:23 2024 +0000
+++ b/jbrowse2/jbrowse2.xml	Thu Jan 04 02:18:18 2024 +0000
@@ -212,10 +212,11 @@
             </when>
         </conditional>
 
-        <param name="standalone" label="Output JBrowse" type="select">
-            <option value="complete">Complete, for viewing and further local development (JBrowse, tools, documentation, etc.)
+        <param name="standalone" label="Include all reference and track data in the JBrowse2 object" type="select"
+              help="Default is efficient but will not work offline. Including reference sequences, tracks and indexes will allow standalone viewing, at the cost of copying and moving all data" >
+            <option value="complete">Complete: Choose ONLY if need to view offline, or if history cannot be published. WARNING: produces bloated downloads storing redundant copies of all data!
             </option>
-            <option value="minimal" selected="true">Minimal for viewing (Documentation removed)
+            <option value="minimal" selected="true">Sufficient: Uses URLs for Galaxy data. Requires internet access and a published history to download, share and view remotely.
             </option>
         </param>
 
@@ -315,7 +316,7 @@
         <param type="hidden" name="uglyTestingHack" value="" />
     </inputs>
     <outputs>
-        <data format="html" name="output" label="JBrowse on $on_string - $standalone"/>
+        <data format="html" name="output" label="JBrowse2 on $reference_genome.genome.element_identifier - $standalone"/>
     </outputs>
     <tests>
         <test>