# HG changeset patch # User fubar # Date 1704262663 0 # Node ID 22e3d068fdc9086c0e665db7616ae0c23c324cff # Parent af3fba6c21aa4ecdab45df3f775fea417136e4c0 Uploaded diff -r af3fba6c21aa -r 22e3d068fdc9 jbrowse2/galaxyaushum.png Binary file jbrowse2/galaxyaushum.png has changed diff -r af3fba6c21aa -r 22e3d068fdc9 jbrowse2/jbrowse2.py --- a/jbrowse2/jbrowse2.py Wed Jan 03 01:50:05 2024 +0000 +++ b/jbrowse2/jbrowse2.py Wed Jan 03 06:17:43 2024 +0000 @@ -547,7 +547,7 @@ "type": "Gff3TabixAdapter", "gffGzLocation": {"locationType": "UriLocation", "uri": url}, "index": { - "location": {"locationType": "UriLocation", "uri": url + ".tbi"} + "location": {"uri": url + ".tbi", "locationType": "UriLocation"} }, }, "displays": [ @@ -566,14 +566,18 @@ dest = os.path.realpath("%s/%s" % (self.outdir, url)) self._sort_bed(data, dest) tId = trackData["label"] + url = url + ".gz" trackDict = { "type": "FeatureTrack", "trackId": tId, "name": trackData["name"], "assemblyNames": [self.genome_name], "adapter": { - "type": "BedAdapter", - "bedLocation": {"locationType": "UriLocation", "uri": url + ".gz"}, + "type": "BedTabixAdapter", + "bedGzLocation": {"locationType": "UriLocation", "uri": url}, + "index": { + "location": {"uri": url + ".tbi", "locationType": "UriLocation"} + }, }, "displays": [ {