# HG changeset patch # User fubar # Date 1704431181 0 # Node ID 6a41f87b5d7f739e3c9fdf301499744b6e23ab20 # Parent 1e6128ccc82bb757a5f7ff41c589dc2cc739b640 Uploaded diff -r 1e6128ccc82b -r 6a41f87b5d7f jbrowse2/jbrowse2.py --- a/jbrowse2/jbrowse2.py Fri Jan 05 04:57:29 2024 +0000 +++ b/jbrowse2/jbrowse2.py Fri Jan 05 05:06:21 2024 +0000 @@ -172,7 +172,7 @@ for i, genome_node in enumerate(self.genome_paths): if self.debug: log.info("genome_node=%s" % str(genome_node)) - genome_name = genome_node["meta"]["dataset_dname"] + genome_name = genome_node["meta"]["dataset_dname"].strip().split()[0] fapath = genome_node["path"] faname = genome_name + ".fa.gz" fadest = os.path.realpath(os.path.join(self.outdir, faname)) diff -r 1e6128ccc82b -r 6a41f87b5d7f jbrowse2/jbrowse2.xml --- a/jbrowse2/jbrowse2.xml Fri Jan 05 04:57:29 2024 +0000 +++ b/jbrowse2/jbrowse2.xml Fri Jan 05 05:06:21 2024 +0000 @@ -399,9 +399,9 @@ A JBrowse2 history item can be opened by viewing it (the "eye" icon). They can also be downloaded as archives ("floppy disk" icon) to share and for local viewing. One extra step is required before they can be viewed. A local python web server must be started using a script included in each archive. -Unpack the archive (tar -xvzf [filename].tgz) and the first level directory will contain a file named "servejb2.py" +Unzip the archive (*unzip [filename].zip*) and change to the first level directory. It contains a file named "servejb2.py" -Assuming you have python3 installed, running +Assuming you have python3 installed, running: *python3 servjb2.py*