diff pyrev_pos_test/pyrev_pos_test.xml @ 1:0183cad9d13b draft

planemo upload
author fubar
date Thu, 22 Feb 2024 10:48:01 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pyrev_pos_test/pyrev_pos_test.xml	Thu Feb 22 10:48:01 2024 +0000
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+<tool name="pyrev_pos_test" id="pyrev_pos_test" version="0.01" profile="22.05">
+  <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay-->
+  <!--Created by toolfactory@galaxy.org at 22/02/2024 10:27:18 using the Galaxy Tool Factory.-->
+  <description></description>
+  <requirements/>
+  <version_command><![CDATA[echo "0.01"]]></version_command>
+  <command><![CDATA[python
+'$runme'
+$Input_text_file_to_be_reversed
+$pyrev_positionalparse_output]]></command>
+  <configfiles>
+    <configfile name="runme"><![CDATA[#raw
+## reverse order of text by row
+## ToolFactory demonstration
+## positional parameters
+import sys
+inp = sys.argv[1]
+outp = sys.argv[2]
+i = open(inp,'r').readlines()
+o = open(outp,'w')
+for row in i:
+  rs = row.rstrip()
+  rs = list(rs)
+  rs.reverse()
+  o.write(''.join(rs))
+  o.write('\n')
+o.close()
+#end raw]]></configfile>
+  </configfiles>
+  <inputs>
+    <param name="Input_text_file_to_be_reversed" type="data" optional="false" label="Input text file to be reversed" help="" format="txt" multiple="false"/>
+  </inputs>
+  <outputs>
+    <data name="pyrev_positionalparse_output" format="txt" label="pyrev_positionalparse_output" hidden="false"/>
+  </outputs>
+  <tests>
+    <test>
+      <output name="pyrev_positionalparse_output" value="pyrev_positionalparse_output_sample" compare="diff" lines_diff="0"/>
+      <param name="Input_text_file_to_be_reversed" value="Input_text_file_to_be_reversed_sample"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+ **What it Does**
+  ]]></help>
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/bts573</citation>
+  </citations>
+</tool>
+