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comparison seqrequester/build/obj/lib/libseqrequester.a/utility/src/kmers-v1/kmers.P @ 1:1085e094cf5f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 7ceb6658309a7ababe622b5d92e729e5470e22f0-dirty
author fubar
date Sat, 13 Jul 2024 12:39:06 +0000
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0:dd71d3167476 1:1085e094cf5f
1 /home/ross/rossgit/microsatbed/seqrequester/build/obj/lib/libseqrequester.a/utility/src/kmers-v1/kmers.o: \
2 utility/src/kmers-v1/kmers.C /usr/include/stdc-predef.h \
3 utility/src/kmers.H utility/src/kmers-v1/kmers-tiny.H \
4 utility/src/types.H utility/src/datastructures/types-v1.H \
5 /usr/include/c++/13/cstdio \
6 /usr/include/x86_64-linux-gnu/c++/13/bits/c++config.h \
7 /usr/include/x86_64-linux-gnu/c++/13/bits/os_defines.h \
8 /usr/include/features.h /usr/include/features-time64.h \
9 /usr/include/x86_64-linux-gnu/bits/wordsize.h \
10 /usr/include/x86_64-linux-gnu/bits/timesize.h \
11 /usr/include/x86_64-linux-gnu/sys/cdefs.h \
12 /usr/include/x86_64-linux-gnu/bits/long-double.h \
13 /usr/include/x86_64-linux-gnu/gnu/stubs.h \
14 /usr/include/x86_64-linux-gnu/gnu/stubs-64.h \
15 /usr/include/x86_64-linux-gnu/c++/13/bits/cpu_defines.h \
16 /usr/include/c++/13/pstl/pstl_config.h /usr/include/stdio.h \
17 /usr/include/x86_64-linux-gnu/bits/libc-header-start.h \
18 /usr/lib/gcc/x86_64-linux-gnu/13/include/stddef.h \
19 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdarg.h \
20 /usr/include/x86_64-linux-gnu/bits/types.h \
21 /usr/include/x86_64-linux-gnu/bits/typesizes.h \
22 /usr/include/x86_64-linux-gnu/bits/time64.h \
23 /usr/include/x86_64-linux-gnu/bits/types/__fpos_t.h \
24 /usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h \
25 /usr/include/x86_64-linux-gnu/bits/types/__fpos64_t.h \
26 /usr/include/x86_64-linux-gnu/bits/types/__FILE.h \
27 /usr/include/x86_64-linux-gnu/bits/types/FILE.h \
28 /usr/include/x86_64-linux-gnu/bits/types/struct_FILE.h \
29 /usr/include/x86_64-linux-gnu/bits/types/cookie_io_functions_t.h \
30 /usr/include/x86_64-linux-gnu/bits/stdio_lim.h \
31 /usr/include/x86_64-linux-gnu/bits/floatn.h \
32 /usr/include/x86_64-linux-gnu/bits/floatn-common.h \
33 /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h \
34 /usr/include/x86_64-linux-gnu/bits/stdio.h \
35 /usr/include/x86_64-linux-gnu/bits/stdio2.h /usr/include/c++/13/cstdlib \
36 /usr/include/stdlib.h /usr/include/x86_64-linux-gnu/bits/waitflags.h \
37 /usr/include/x86_64-linux-gnu/bits/waitstatus.h \
38 /usr/include/x86_64-linux-gnu/bits/types/locale_t.h \
39 /usr/include/x86_64-linux-gnu/bits/types/__locale_t.h \
40 /usr/include/x86_64-linux-gnu/sys/types.h \
41 /usr/include/x86_64-linux-gnu/bits/types/clock_t.h \
42 /usr/include/x86_64-linux-gnu/bits/types/clockid_t.h \
43 /usr/include/x86_64-linux-gnu/bits/types/time_t.h \
44 /usr/include/x86_64-linux-gnu/bits/types/timer_t.h \
45 /usr/include/x86_64-linux-gnu/bits/stdint-intn.h /usr/include/endian.h \
46 /usr/include/x86_64-linux-gnu/bits/endian.h \
47 /usr/include/x86_64-linux-gnu/bits/endianness.h \
48 /usr/include/x86_64-linux-gnu/bits/byteswap.h \
49 /usr/include/x86_64-linux-gnu/bits/uintn-identity.h \
50 /usr/include/x86_64-linux-gnu/sys/select.h \
51 /usr/include/x86_64-linux-gnu/bits/select.h \
52 /usr/include/x86_64-linux-gnu/bits/types/sigset_t.h \
53 /usr/include/x86_64-linux-gnu/bits/types/__sigset_t.h \
54 /usr/include/x86_64-linux-gnu/bits/types/struct_timeval.h \
55 /usr/include/x86_64-linux-gnu/bits/types/struct_timespec.h \
56 /usr/include/x86_64-linux-gnu/bits/select2.h \
57 /usr/include/x86_64-linux-gnu/bits/select-decl.h \
58 /usr/include/x86_64-linux-gnu/bits/pthreadtypes.h \
59 /usr/include/x86_64-linux-gnu/bits/thread-shared-types.h \
60 /usr/include/x86_64-linux-gnu/bits/pthreadtypes-arch.h \
61 /usr/include/x86_64-linux-gnu/bits/atomic_wide_counter.h \
62 /usr/include/x86_64-linux-gnu/bits/struct_mutex.h \
63 /usr/include/x86_64-linux-gnu/bits/struct_rwlock.h /usr/include/alloca.h \
64 /usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h \
65 /usr/include/x86_64-linux-gnu/bits/stdlib-float.h \
66 /usr/include/x86_64-linux-gnu/bits/stdlib.h \
67 /usr/include/c++/13/bits/std_abs.h /usr/include/c++/13/cstdarg \
68 /usr/include/c++/13/cstdint \
69 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdint.h /usr/include/stdint.h \
70 /usr/include/x86_64-linux-gnu/bits/wchar.h \
71 /usr/include/x86_64-linux-gnu/bits/stdint-uintn.h \
72 /usr/include/x86_64-linux-gnu/bits/stdint-least.h \
73 /usr/include/c++/13/cinttypes /usr/include/inttypes.h \
74 /usr/include/c++/13/climits \
75 /usr/lib/gcc/x86_64-linux-gnu/13/include/limits.h \
76 /usr/lib/gcc/x86_64-linux-gnu/13/include/syslimits.h \
77 /usr/include/limits.h /usr/include/x86_64-linux-gnu/bits/posix1_lim.h \
78 /usr/include/x86_64-linux-gnu/bits/local_lim.h \
79 /usr/include/linux/limits.h \
80 /usr/include/x86_64-linux-gnu/bits/pthread_stack_min-dynamic.h \
81 /usr/include/x86_64-linux-gnu/bits/posix2_lim.h \
82 /usr/include/x86_64-linux-gnu/bits/xopen_lim.h \
83 /usr/include/x86_64-linux-gnu/bits/uio_lim.h /usr/include/unistd.h \
84 /usr/include/x86_64-linux-gnu/bits/posix_opt.h \
85 /usr/include/x86_64-linux-gnu/bits/environments.h \
86 /usr/include/x86_64-linux-gnu/bits/confname.h \
87 /usr/include/x86_64-linux-gnu/bits/getopt_posix.h \
88 /usr/include/x86_64-linux-gnu/bits/getopt_core.h \
89 /usr/include/x86_64-linux-gnu/bits/unistd.h \
90 /usr/include/x86_64-linux-gnu/bits/unistd-decl.h \
91 /usr/include/x86_64-linux-gnu/bits/unistd_ext.h \
92 /usr/include/linux/close_range.h /usr/include/c++/13/cstring \
93 /usr/include/string.h /usr/include/strings.h \
94 /usr/include/x86_64-linux-gnu/bits/strings_fortified.h \
95 /usr/include/x86_64-linux-gnu/bits/string_fortified.h \
96 /usr/include/c++/13/cctype /usr/include/ctype.h \
97 /usr/include/c++/13/cfloat \
98 /usr/lib/gcc/x86_64-linux-gnu/13/include/float.h \
99 /usr/include/c++/13/cmath /usr/include/c++/13/bits/requires_hosted.h \
100 /usr/include/c++/13/bits/cpp_type_traits.h \
101 /usr/include/c++/13/ext/type_traits.h /usr/include/math.h \
102 /usr/include/x86_64-linux-gnu/bits/math-vector.h \
103 /usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h \
104 /usr/include/x86_64-linux-gnu/bits/flt-eval-method.h \
105 /usr/include/x86_64-linux-gnu/bits/fp-logb.h \
106 /usr/include/x86_64-linux-gnu/bits/fp-fast.h \
107 /usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h \
108 /usr/include/x86_64-linux-gnu/bits/mathcalls.h \
109 /usr/include/x86_64-linux-gnu/bits/mathcalls-narrow.h \
110 /usr/include/x86_64-linux-gnu/bits/iscanonical.h \
111 /usr/include/c++/13/bits/specfun.h \
112 /usr/include/c++/13/bits/stl_algobase.h \
113 /usr/include/c++/13/bits/functexcept.h \
114 /usr/include/c++/13/bits/exception_defines.h \
115 /usr/include/c++/13/ext/numeric_traits.h \
116 /usr/include/c++/13/bits/stl_pair.h /usr/include/c++/13/type_traits \
117 /usr/include/c++/13/bits/move.h /usr/include/c++/13/bits/utility.h \
118 /usr/include/c++/13/compare /usr/include/c++/13/concepts \
119 /usr/include/c++/13/bits/stl_iterator_base_types.h \
120 /usr/include/c++/13/bits/iterator_concepts.h \
121 /usr/include/c++/13/bits/ptr_traits.h \
122 /usr/include/c++/13/bits/ranges_cmp.h \
123 /usr/include/c++/13/bits/stl_iterator_base_funcs.h \
124 /usr/include/c++/13/bits/concept_check.h \
125 /usr/include/c++/13/debug/assertions.h \
126 /usr/include/c++/13/bits/stl_iterator.h /usr/include/c++/13/new \
127 /usr/include/c++/13/bits/exception.h \
128 /usr/include/c++/13/bits/stl_construct.h \
129 /usr/include/c++/13/debug/debug.h \
130 /usr/include/c++/13/bits/predefined_ops.h /usr/include/c++/13/bit \
131 /usr/include/c++/13/limits /usr/include/c++/13/tr1/gamma.tcc \
132 /usr/include/c++/13/tr1/special_function_util.h \
133 /usr/include/c++/13/tr1/bessel_function.tcc \
134 /usr/include/c++/13/tr1/beta_function.tcc \
135 /usr/include/c++/13/tr1/ell_integral.tcc \
136 /usr/include/c++/13/tr1/exp_integral.tcc \
137 /usr/include/c++/13/tr1/hypergeometric.tcc \
138 /usr/include/c++/13/tr1/legendre_function.tcc \
139 /usr/include/c++/13/tr1/modified_bessel_func.tcc \
140 /usr/include/c++/13/tr1/poly_hermite.tcc \
141 /usr/include/c++/13/tr1/poly_laguerre.tcc \
142 /usr/include/c++/13/tr1/riemann_zeta.tcc /usr/include/c++/13/cassert \
143 /usr/include/assert.h /usr/include/c++/13/cerrno /usr/include/errno.h \
144 /usr/include/x86_64-linux-gnu/bits/errno.h /usr/include/linux/errno.h \
145 /usr/include/x86_64-linux-gnu/asm/errno.h \
146 /usr/include/asm-generic/errno.h /usr/include/asm-generic/errno-base.h \
147 /usr/include/x86_64-linux-gnu/bits/types/error_t.h \
148 /usr/lib/gcc/x86_64-linux-gnu/13/include/omp.h /usr/include/c++/13/set \
149 /usr/include/c++/13/bits/stl_tree.h /usr/include/c++/13/bits/allocator.h \
150 /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h \
151 /usr/include/c++/13/bits/new_allocator.h \
152 /usr/include/c++/13/bits/memoryfwd.h \
153 /usr/include/c++/13/bits/stl_function.h \
154 /usr/include/c++/13/backward/binders.h \
155 /usr/include/c++/13/ext/alloc_traits.h \
156 /usr/include/c++/13/bits/alloc_traits.h \
157 /usr/include/c++/13/ext/aligned_buffer.h \
158 /usr/include/c++/13/bits/node_handle.h \
159 /usr/include/c++/13/bits/stl_set.h /usr/include/c++/13/initializer_list \
160 /usr/include/c++/13/bits/stl_multiset.h \
161 /usr/include/c++/13/bits/range_access.h \
162 /usr/include/c++/13/bits/erase_if.h \
163 /usr/include/c++/13/bits/memory_resource.h /usr/include/c++/13/cstddef \
164 /usr/include/c++/13/bits/uses_allocator.h \
165 /usr/include/c++/13/bits/uses_allocator_args.h /usr/include/c++/13/tuple \
166 /usr/include/c++/13/bits/invoke.h /usr/include/c++/13/bits/ranges_util.h \
167 /usr/include/c++/13/bits/ranges_base.h \
168 /usr/include/c++/13/bits/max_size_type.h /usr/include/c++/13/numbers \
169 /usr/include/c++/13/vector /usr/include/c++/13/bits/stl_uninitialized.h \
170 /usr/include/c++/13/bits/stl_vector.h \
171 /usr/include/c++/13/bits/stl_bvector.h \
172 /usr/include/c++/13/bits/functional_hash.h \
173 /usr/include/c++/13/bits/hash_bytes.h /usr/include/c++/13/bits/refwrap.h \
174 /usr/include/c++/13/bits/vector.tcc \
175 utility/src/kmers-v1/kmers-histogram.H /usr/include/c++/13/map \
176 /usr/include/c++/13/bits/stl_map.h \
177 /usr/include/c++/13/bits/stl_multimap.h utility/src/bits.H \
178 utility/src/bits/fibonacci-v1.H utility/src/bits/bits-v1.H \
179 utility/src/bits/murmur-v1.H utility/src/bits/bits-v1.H \
180 utility/src/bits/hexDump-v1.H utility/src/bits/bitArray-v1.H \
181 utility/src/bits/wordArray-v1.H /usr/include/c++/13/atomic \
182 /usr/include/c++/13/bits/atomic_base.h \
183 /usr/include/c++/13/bits/atomic_lockfree_defines.h \
184 /usr/include/c++/13/bits/atomic_wait.h \
185 /usr/include/x86_64-linux-gnu/c++/13/bits/gthr.h \
186 /usr/include/x86_64-linux-gnu/c++/13/bits/gthr-default.h \
187 /usr/include/pthread.h /usr/include/sched.h \
188 /usr/include/x86_64-linux-gnu/bits/sched.h \
189 /usr/include/x86_64-linux-gnu/bits/types/struct_sched_param.h \
190 /usr/include/x86_64-linux-gnu/bits/cpu-set.h /usr/include/time.h \
191 /usr/include/x86_64-linux-gnu/bits/time.h \
192 /usr/include/x86_64-linux-gnu/bits/timex.h \
193 /usr/include/x86_64-linux-gnu/bits/types/struct_tm.h \
194 /usr/include/x86_64-linux-gnu/bits/types/struct_itimerspec.h \
195 /usr/include/x86_64-linux-gnu/bits/setjmp.h \
196 /usr/include/x86_64-linux-gnu/bits/types/struct___jmp_buf_tag.h \
197 /usr/include/syscall.h /usr/include/x86_64-linux-gnu/sys/syscall.h \
198 /usr/include/x86_64-linux-gnu/asm/unistd.h \
199 /usr/include/x86_64-linux-gnu/asm/unistd_64.h \
200 /usr/include/x86_64-linux-gnu/bits/syscall.h \
201 /usr/include/c++/13/bits/std_mutex.h utility/src/bits/stuffedBits-v1.H \
202 utility/src/arrays.H utility/src/datastructures/arrays-v1.H \
203 utility/src/datastructures/stacks-v1.H \
204 utility/src/datastructures/sets-v1.H utility/src/bits/murmur-v1.H \
205 utility/src/files.H utility/src/files/accessing-v1.H \
206 utility/src/files/reading-v1.H utility/src/files/accessing-v1.H \
207 utility/src/files/writing-v1.H utility/src/files/buffered-v1-reading.H \
208 utility/src/strings.H utility/src/datastructures/strings-v1.H \
209 utility/src/datastructures/regex-v1.H /usr/include/regex.h \
210 utility/src/system.H utility/src/system/system-v1.H \
211 /usr/include/c++/13/csignal /usr/include/signal.h \
212 /usr/include/x86_64-linux-gnu/bits/signum-generic.h \
213 /usr/include/x86_64-linux-gnu/bits/signum-arch.h \
214 /usr/include/x86_64-linux-gnu/bits/types/sig_atomic_t.h \
215 /usr/include/x86_64-linux-gnu/bits/types/siginfo_t.h \
216 /usr/include/x86_64-linux-gnu/bits/types/__sigval_t.h \
217 /usr/include/x86_64-linux-gnu/bits/siginfo-arch.h \
218 /usr/include/x86_64-linux-gnu/bits/siginfo-consts.h \
219 /usr/include/x86_64-linux-gnu/bits/siginfo-consts-arch.h \
220 /usr/include/x86_64-linux-gnu/bits/types/sigval_t.h \
221 /usr/include/x86_64-linux-gnu/bits/types/sigevent_t.h \
222 /usr/include/x86_64-linux-gnu/bits/sigevent-consts.h \
223 /usr/include/x86_64-linux-gnu/bits/sigaction.h \
224 /usr/include/x86_64-linux-gnu/bits/sigcontext.h \
225 /usr/include/x86_64-linux-gnu/bits/types/stack_t.h \
226 /usr/include/x86_64-linux-gnu/sys/ucontext.h \
227 /usr/include/x86_64-linux-gnu/bits/sigstack.h \
228 /usr/include/x86_64-linux-gnu/bits/sigstksz.h \
229 /usr/include/x86_64-linux-gnu/bits/ss_flags.h \
230 /usr/include/x86_64-linux-gnu/bits/types/struct_sigstack.h \
231 /usr/include/x86_64-linux-gnu/bits/sigthread.h \
232 /usr/include/x86_64-linux-gnu/bits/signal_ext.h \
233 utility/src/system/runtime-v1.H utility/src/version.H \
234 utility/src/system/ansi-escape-v1.H utility/src/system/time-v1.H \
235 /usr/include/x86_64-linux-gnu/sys/stat.h \
236 /usr/include/x86_64-linux-gnu/bits/stat.h \
237 /usr/include/x86_64-linux-gnu/bits/struct_stat.h \
238 /usr/include/x86_64-linux-gnu/bits/statx.h /usr/include/linux/stat.h \
239 /usr/include/linux/types.h /usr/include/x86_64-linux-gnu/asm/types.h \
240 /usr/include/asm-generic/types.h /usr/include/asm-generic/int-ll64.h \
241 /usr/include/x86_64-linux-gnu/asm/bitsperlong.h \
242 /usr/include/asm-generic/bitsperlong.h /usr/include/linux/posix_types.h \
243 /usr/include/linux/stddef.h \
244 /usr/include/x86_64-linux-gnu/asm/posix_types.h \
245 /usr/include/x86_64-linux-gnu/asm/posix_types_64.h \
246 /usr/include/asm-generic/posix_types.h \
247 /usr/include/x86_64-linux-gnu/bits/statx-generic.h \
248 /usr/include/x86_64-linux-gnu/bits/types/struct_statx_timestamp.h \
249 /usr/include/x86_64-linux-gnu/bits/types/struct_statx.h \
250 utility/src/system/cpuIdent-v1.H utility/src/system/logging-v1.H \
251 utility/src/system/speedCounter-v1.H utility/src/system/sweatShop-v1.H \
252 utility/src/datastructures/regex-v2.H \
253 utility/src/datastructures/keyAndValue-v1.H \
254 utility/src/datastructures/splitToWords-v1.H \
255 utility/src/datastructures/stringList-v1.H \
256 utility/src/files/buffered-v1-writing.H \
257 utility/src/files/compressed-v1.H \
258 utility/src/files/compressed-v1-reading.H \
259 utility/src/files/compressed-v1.H \
260 utility/src/files/compressed-v1-writing.H \
261 utility/src/files/memoryMapped-v1.H utility/src/files/fasta-fastq-v1.H \
262 utility/src/kmers-v1/kmers-iterator.H \
263 utility/src/kmers-v1/kmers-writer.H utility/src/kmers-v1/kmers-files.H \
264 utility/src/kmers-v1/kmers-writer-block.H \
265 utility/src/kmers-v1/kmers-writer-stream.H \
266 utility/src/kmers-v1/kmers-reader.H utility/src/kmers-v1/kmers-lookup.H \
267 utility/src/sequence.H utility/src/sequence/sequence-v1.H \
268 utility/src/sequence/dnaSeq-v1.H utility/src/sequence/dnaSeqFile-v1.H \
269 utility/src/htslib/hts/sam.h utility/src/htslib/hts/hts.h \
270 utility/src/htslib/hts/hts_defs.h utility/src/htslib/hts/hts_log.h \
271 utility/src/htslib/hts/kstring.h /usr/include/c++/13/stdlib.h \
272 utility/src/htslib/hts/kroundup.h utility/src/htslib/hts/hts_endian.h \
273 utility/src/sequence/dnaSeq-v1.H utility/src/kmers-v2/kmers-tiny.H \
274 utility/src/kmers-v2/kmers-histogram.H \
275 utility/src/kmers-v2/kmers-iterator.H \
276 utility/src/kmers-v2/kmers-writer.H utility/src/kmers-v2/kmers-files.H \
277 utility/src/kmers-v2/kmers-writer-block.H \
278 utility/src/kmers-v2/kmers-writer-stream.H \
279 utility/src/kmers-v2/kmers-reader.H utility/src/kmers-v2/kmers-lookup.H
280 utility/src/kmers-v1/kmers.C /usr/include/stdc-predef.h :
281 utility/src/kmers.H utility/src/kmers-v1/kmers-tiny.H :
282 utility/src/types.H utility/src/datastructures/types-v1.H :
283 /usr/include/c++/13/cstdio :
284 /usr/include/x86_64-linux-gnu/c++/13/bits/c++config.h :
285 /usr/include/x86_64-linux-gnu/c++/13/bits/os_defines.h :
286 /usr/include/features.h /usr/include/features-time64.h :
287 /usr/include/x86_64-linux-gnu/bits/wordsize.h :
288 /usr/include/x86_64-linux-gnu/bits/timesize.h :
289 /usr/include/x86_64-linux-gnu/sys/cdefs.h :
290 /usr/include/x86_64-linux-gnu/bits/long-double.h :
291 /usr/include/x86_64-linux-gnu/gnu/stubs.h :
292 /usr/include/x86_64-linux-gnu/gnu/stubs-64.h :
293 /usr/include/x86_64-linux-gnu/c++/13/bits/cpu_defines.h :
294 /usr/include/c++/13/pstl/pstl_config.h /usr/include/stdio.h :
295 /usr/include/x86_64-linux-gnu/bits/libc-header-start.h :
296 /usr/lib/gcc/x86_64-linux-gnu/13/include/stddef.h :
297 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdarg.h :
298 /usr/include/x86_64-linux-gnu/bits/types.h :
299 /usr/include/x86_64-linux-gnu/bits/typesizes.h :
300 /usr/include/x86_64-linux-gnu/bits/time64.h :
301 /usr/include/x86_64-linux-gnu/bits/types/__fpos_t.h :
302 /usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h :
303 /usr/include/x86_64-linux-gnu/bits/types/__fpos64_t.h :
304 /usr/include/x86_64-linux-gnu/bits/types/__FILE.h :
305 /usr/include/x86_64-linux-gnu/bits/types/FILE.h :
306 /usr/include/x86_64-linux-gnu/bits/types/struct_FILE.h :
307 /usr/include/x86_64-linux-gnu/bits/types/cookie_io_functions_t.h :
308 /usr/include/x86_64-linux-gnu/bits/stdio_lim.h :
309 /usr/include/x86_64-linux-gnu/bits/floatn.h :
310 /usr/include/x86_64-linux-gnu/bits/floatn-common.h :
311 /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h :
312 /usr/include/x86_64-linux-gnu/bits/stdio.h :
313 /usr/include/x86_64-linux-gnu/bits/stdio2.h /usr/include/c++/13/cstdlib :
314 /usr/include/stdlib.h /usr/include/x86_64-linux-gnu/bits/waitflags.h :
315 /usr/include/x86_64-linux-gnu/bits/waitstatus.h :
316 /usr/include/x86_64-linux-gnu/bits/types/locale_t.h :
317 /usr/include/x86_64-linux-gnu/bits/types/__locale_t.h :
318 /usr/include/x86_64-linux-gnu/sys/types.h :
319 /usr/include/x86_64-linux-gnu/bits/types/clock_t.h :
320 /usr/include/x86_64-linux-gnu/bits/types/clockid_t.h :
321 /usr/include/x86_64-linux-gnu/bits/types/time_t.h :
322 /usr/include/x86_64-linux-gnu/bits/types/timer_t.h :
323 /usr/include/x86_64-linux-gnu/bits/stdint-intn.h /usr/include/endian.h :
324 /usr/include/x86_64-linux-gnu/bits/endian.h :
325 /usr/include/x86_64-linux-gnu/bits/endianness.h :
326 /usr/include/x86_64-linux-gnu/bits/byteswap.h :
327 /usr/include/x86_64-linux-gnu/bits/uintn-identity.h :
328 /usr/include/x86_64-linux-gnu/sys/select.h :
329 /usr/include/x86_64-linux-gnu/bits/select.h :
330 /usr/include/x86_64-linux-gnu/bits/types/sigset_t.h :
331 /usr/include/x86_64-linux-gnu/bits/types/__sigset_t.h :
332 /usr/include/x86_64-linux-gnu/bits/types/struct_timeval.h :
333 /usr/include/x86_64-linux-gnu/bits/types/struct_timespec.h :
334 /usr/include/x86_64-linux-gnu/bits/select2.h :
335 /usr/include/x86_64-linux-gnu/bits/select-decl.h :
336 /usr/include/x86_64-linux-gnu/bits/pthreadtypes.h :
337 /usr/include/x86_64-linux-gnu/bits/thread-shared-types.h :
338 /usr/include/x86_64-linux-gnu/bits/pthreadtypes-arch.h :
339 /usr/include/x86_64-linux-gnu/bits/atomic_wide_counter.h :
340 /usr/include/x86_64-linux-gnu/bits/struct_mutex.h :
341 /usr/include/x86_64-linux-gnu/bits/struct_rwlock.h /usr/include/alloca.h :
342 /usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h :
343 /usr/include/x86_64-linux-gnu/bits/stdlib-float.h :
344 /usr/include/x86_64-linux-gnu/bits/stdlib.h :
345 /usr/include/c++/13/bits/std_abs.h /usr/include/c++/13/cstdarg :
346 /usr/include/c++/13/cstdint :
347 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdint.h /usr/include/stdint.h :
348 /usr/include/x86_64-linux-gnu/bits/wchar.h :
349 /usr/include/x86_64-linux-gnu/bits/stdint-uintn.h :
350 /usr/include/x86_64-linux-gnu/bits/stdint-least.h :
351 /usr/include/c++/13/cinttypes /usr/include/inttypes.h :
352 /usr/include/c++/13/climits :
353 /usr/lib/gcc/x86_64-linux-gnu/13/include/limits.h :
354 /usr/lib/gcc/x86_64-linux-gnu/13/include/syslimits.h :
355 /usr/include/limits.h /usr/include/x86_64-linux-gnu/bits/posix1_lim.h :
356 /usr/include/x86_64-linux-gnu/bits/local_lim.h :
357 /usr/include/linux/limits.h :
358 /usr/include/x86_64-linux-gnu/bits/pthread_stack_min-dynamic.h :
359 /usr/include/x86_64-linux-gnu/bits/posix2_lim.h :
360 /usr/include/x86_64-linux-gnu/bits/xopen_lim.h :
361 /usr/include/x86_64-linux-gnu/bits/uio_lim.h /usr/include/unistd.h :
362 /usr/include/x86_64-linux-gnu/bits/posix_opt.h :
363 /usr/include/x86_64-linux-gnu/bits/environments.h :
364 /usr/include/x86_64-linux-gnu/bits/confname.h :
365 /usr/include/x86_64-linux-gnu/bits/getopt_posix.h :
366 /usr/include/x86_64-linux-gnu/bits/getopt_core.h :
367 /usr/include/x86_64-linux-gnu/bits/unistd.h :
368 /usr/include/x86_64-linux-gnu/bits/unistd-decl.h :
369 /usr/include/x86_64-linux-gnu/bits/unistd_ext.h :
370 /usr/include/linux/close_range.h /usr/include/c++/13/cstring :
371 /usr/include/string.h /usr/include/strings.h :
372 /usr/include/x86_64-linux-gnu/bits/strings_fortified.h :
373 /usr/include/x86_64-linux-gnu/bits/string_fortified.h :
374 /usr/include/c++/13/cctype /usr/include/ctype.h :
375 /usr/include/c++/13/cfloat :
376 /usr/lib/gcc/x86_64-linux-gnu/13/include/float.h :
377 /usr/include/c++/13/cmath /usr/include/c++/13/bits/requires_hosted.h :
378 /usr/include/c++/13/bits/cpp_type_traits.h :
379 /usr/include/c++/13/ext/type_traits.h /usr/include/math.h :
380 /usr/include/x86_64-linux-gnu/bits/math-vector.h :
381 /usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h :
382 /usr/include/x86_64-linux-gnu/bits/flt-eval-method.h :
383 /usr/include/x86_64-linux-gnu/bits/fp-logb.h :
384 /usr/include/x86_64-linux-gnu/bits/fp-fast.h :
385 /usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h :
386 /usr/include/x86_64-linux-gnu/bits/mathcalls.h :
387 /usr/include/x86_64-linux-gnu/bits/mathcalls-narrow.h :
388 /usr/include/x86_64-linux-gnu/bits/iscanonical.h :
389 /usr/include/c++/13/bits/specfun.h :
390 /usr/include/c++/13/bits/stl_algobase.h :
391 /usr/include/c++/13/bits/functexcept.h :
392 /usr/include/c++/13/bits/exception_defines.h :
393 /usr/include/c++/13/ext/numeric_traits.h :
394 /usr/include/c++/13/bits/stl_pair.h /usr/include/c++/13/type_traits :
395 /usr/include/c++/13/bits/move.h /usr/include/c++/13/bits/utility.h :
396 /usr/include/c++/13/compare /usr/include/c++/13/concepts :
397 /usr/include/c++/13/bits/stl_iterator_base_types.h :
398 /usr/include/c++/13/bits/iterator_concepts.h :
399 /usr/include/c++/13/bits/ptr_traits.h :
400 /usr/include/c++/13/bits/ranges_cmp.h :
401 /usr/include/c++/13/bits/stl_iterator_base_funcs.h :
402 /usr/include/c++/13/bits/concept_check.h :
403 /usr/include/c++/13/debug/assertions.h :
404 /usr/include/c++/13/bits/stl_iterator.h /usr/include/c++/13/new :
405 /usr/include/c++/13/bits/exception.h :
406 /usr/include/c++/13/bits/stl_construct.h :
407 /usr/include/c++/13/debug/debug.h :
408 /usr/include/c++/13/bits/predefined_ops.h /usr/include/c++/13/bit :
409 /usr/include/c++/13/limits /usr/include/c++/13/tr1/gamma.tcc :
410 /usr/include/c++/13/tr1/special_function_util.h :
411 /usr/include/c++/13/tr1/bessel_function.tcc :
412 /usr/include/c++/13/tr1/beta_function.tcc :
413 /usr/include/c++/13/tr1/ell_integral.tcc :
414 /usr/include/c++/13/tr1/exp_integral.tcc :
415 /usr/include/c++/13/tr1/hypergeometric.tcc :
416 /usr/include/c++/13/tr1/legendre_function.tcc :
417 /usr/include/c++/13/tr1/modified_bessel_func.tcc :
418 /usr/include/c++/13/tr1/poly_hermite.tcc :
419 /usr/include/c++/13/tr1/poly_laguerre.tcc :
420 /usr/include/c++/13/tr1/riemann_zeta.tcc /usr/include/c++/13/cassert :
421 /usr/include/assert.h /usr/include/c++/13/cerrno /usr/include/errno.h :
422 /usr/include/x86_64-linux-gnu/bits/errno.h /usr/include/linux/errno.h :
423 /usr/include/x86_64-linux-gnu/asm/errno.h :
424 /usr/include/asm-generic/errno.h /usr/include/asm-generic/errno-base.h :
425 /usr/include/x86_64-linux-gnu/bits/types/error_t.h :
426 /usr/lib/gcc/x86_64-linux-gnu/13/include/omp.h /usr/include/c++/13/set :
427 /usr/include/c++/13/bits/stl_tree.h /usr/include/c++/13/bits/allocator.h :
428 /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h :
429 /usr/include/c++/13/bits/new_allocator.h :
430 /usr/include/c++/13/bits/memoryfwd.h :
431 /usr/include/c++/13/bits/stl_function.h :
432 /usr/include/c++/13/backward/binders.h :
433 /usr/include/c++/13/ext/alloc_traits.h :
434 /usr/include/c++/13/bits/alloc_traits.h :
435 /usr/include/c++/13/ext/aligned_buffer.h :
436 /usr/include/c++/13/bits/node_handle.h :
437 /usr/include/c++/13/bits/stl_set.h /usr/include/c++/13/initializer_list :
438 /usr/include/c++/13/bits/stl_multiset.h :
439 /usr/include/c++/13/bits/range_access.h :
440 /usr/include/c++/13/bits/erase_if.h :
441 /usr/include/c++/13/bits/memory_resource.h /usr/include/c++/13/cstddef :
442 /usr/include/c++/13/bits/uses_allocator.h :
443 /usr/include/c++/13/bits/uses_allocator_args.h /usr/include/c++/13/tuple :
444 /usr/include/c++/13/bits/invoke.h /usr/include/c++/13/bits/ranges_util.h :
445 /usr/include/c++/13/bits/ranges_base.h :
446 /usr/include/c++/13/bits/max_size_type.h /usr/include/c++/13/numbers :
447 /usr/include/c++/13/vector /usr/include/c++/13/bits/stl_uninitialized.h :
448 /usr/include/c++/13/bits/stl_vector.h :
449 /usr/include/c++/13/bits/stl_bvector.h :
450 /usr/include/c++/13/bits/functional_hash.h :
451 /usr/include/c++/13/bits/hash_bytes.h /usr/include/c++/13/bits/refwrap.h :
452 /usr/include/c++/13/bits/vector.tcc :
453 utility/src/kmers-v1/kmers-histogram.H /usr/include/c++/13/map :
454 /usr/include/c++/13/bits/stl_map.h :
455 /usr/include/c++/13/bits/stl_multimap.h utility/src/bits.H :
456 utility/src/bits/fibonacci-v1.H utility/src/bits/bits-v1.H :
457 utility/src/bits/murmur-v1.H utility/src/bits/bits-v1.H :
458 utility/src/bits/hexDump-v1.H utility/src/bits/bitArray-v1.H :
459 utility/src/bits/wordArray-v1.H /usr/include/c++/13/atomic :
460 /usr/include/c++/13/bits/atomic_base.h :
461 /usr/include/c++/13/bits/atomic_lockfree_defines.h :
462 /usr/include/c++/13/bits/atomic_wait.h :
463 /usr/include/x86_64-linux-gnu/c++/13/bits/gthr.h :
464 /usr/include/x86_64-linux-gnu/c++/13/bits/gthr-default.h :
465 /usr/include/pthread.h /usr/include/sched.h :
466 /usr/include/x86_64-linux-gnu/bits/sched.h :
467 /usr/include/x86_64-linux-gnu/bits/types/struct_sched_param.h :
468 /usr/include/x86_64-linux-gnu/bits/cpu-set.h /usr/include/time.h :
469 /usr/include/x86_64-linux-gnu/bits/time.h :
470 /usr/include/x86_64-linux-gnu/bits/timex.h :
471 /usr/include/x86_64-linux-gnu/bits/types/struct_tm.h :
472 /usr/include/x86_64-linux-gnu/bits/types/struct_itimerspec.h :
473 /usr/include/x86_64-linux-gnu/bits/setjmp.h :
474 /usr/include/x86_64-linux-gnu/bits/types/struct___jmp_buf_tag.h :
475 /usr/include/syscall.h /usr/include/x86_64-linux-gnu/sys/syscall.h :
476 /usr/include/x86_64-linux-gnu/asm/unistd.h :
477 /usr/include/x86_64-linux-gnu/asm/unistd_64.h :
478 /usr/include/x86_64-linux-gnu/bits/syscall.h :
479 /usr/include/c++/13/bits/std_mutex.h utility/src/bits/stuffedBits-v1.H :
480 utility/src/arrays.H utility/src/datastructures/arrays-v1.H :
481 utility/src/datastructures/stacks-v1.H :
482 utility/src/datastructures/sets-v1.H utility/src/bits/murmur-v1.H :
483 utility/src/files.H utility/src/files/accessing-v1.H :
484 utility/src/files/reading-v1.H utility/src/files/accessing-v1.H :
485 utility/src/files/writing-v1.H utility/src/files/buffered-v1-reading.H :
486 utility/src/strings.H utility/src/datastructures/strings-v1.H :
487 utility/src/datastructures/regex-v1.H /usr/include/regex.h :
488 utility/src/system.H utility/src/system/system-v1.H :
489 /usr/include/c++/13/csignal /usr/include/signal.h :
490 /usr/include/x86_64-linux-gnu/bits/signum-generic.h :
491 /usr/include/x86_64-linux-gnu/bits/signum-arch.h :
492 /usr/include/x86_64-linux-gnu/bits/types/sig_atomic_t.h :
493 /usr/include/x86_64-linux-gnu/bits/types/siginfo_t.h :
494 /usr/include/x86_64-linux-gnu/bits/types/__sigval_t.h :
495 /usr/include/x86_64-linux-gnu/bits/siginfo-arch.h :
496 /usr/include/x86_64-linux-gnu/bits/siginfo-consts.h :
497 /usr/include/x86_64-linux-gnu/bits/siginfo-consts-arch.h :
498 /usr/include/x86_64-linux-gnu/bits/types/sigval_t.h :
499 /usr/include/x86_64-linux-gnu/bits/types/sigevent_t.h :
500 /usr/include/x86_64-linux-gnu/bits/sigevent-consts.h :
501 /usr/include/x86_64-linux-gnu/bits/sigaction.h :
502 /usr/include/x86_64-linux-gnu/bits/sigcontext.h :
503 /usr/include/x86_64-linux-gnu/bits/types/stack_t.h :
504 /usr/include/x86_64-linux-gnu/sys/ucontext.h :
505 /usr/include/x86_64-linux-gnu/bits/sigstack.h :
506 /usr/include/x86_64-linux-gnu/bits/sigstksz.h :
507 /usr/include/x86_64-linux-gnu/bits/ss_flags.h :
508 /usr/include/x86_64-linux-gnu/bits/types/struct_sigstack.h :
509 /usr/include/x86_64-linux-gnu/bits/sigthread.h :
510 /usr/include/x86_64-linux-gnu/bits/signal_ext.h :
511 utility/src/system/runtime-v1.H utility/src/version.H :
512 utility/src/system/ansi-escape-v1.H utility/src/system/time-v1.H :
513 /usr/include/x86_64-linux-gnu/sys/stat.h :
514 /usr/include/x86_64-linux-gnu/bits/stat.h :
515 /usr/include/x86_64-linux-gnu/bits/struct_stat.h :
516 /usr/include/x86_64-linux-gnu/bits/statx.h /usr/include/linux/stat.h :
517 /usr/include/linux/types.h /usr/include/x86_64-linux-gnu/asm/types.h :
518 /usr/include/asm-generic/types.h /usr/include/asm-generic/int-ll64.h :
519 /usr/include/x86_64-linux-gnu/asm/bitsperlong.h :
520 /usr/include/asm-generic/bitsperlong.h /usr/include/linux/posix_types.h :
521 /usr/include/linux/stddef.h :
522 /usr/include/x86_64-linux-gnu/asm/posix_types.h :
523 /usr/include/x86_64-linux-gnu/asm/posix_types_64.h :
524 /usr/include/asm-generic/posix_types.h :
525 /usr/include/x86_64-linux-gnu/bits/statx-generic.h :
526 /usr/include/x86_64-linux-gnu/bits/types/struct_statx_timestamp.h :
527 /usr/include/x86_64-linux-gnu/bits/types/struct_statx.h :
528 utility/src/system/cpuIdent-v1.H utility/src/system/logging-v1.H :
529 utility/src/system/speedCounter-v1.H utility/src/system/sweatShop-v1.H :
530 utility/src/datastructures/regex-v2.H :
531 utility/src/datastructures/keyAndValue-v1.H :
532 utility/src/datastructures/splitToWords-v1.H :
533 utility/src/datastructures/stringList-v1.H :
534 utility/src/files/buffered-v1-writing.H :
535 utility/src/files/compressed-v1.H :
536 utility/src/files/compressed-v1-reading.H :
537 utility/src/files/compressed-v1.H :
538 utility/src/files/compressed-v1-writing.H :
539 utility/src/files/memoryMapped-v1.H utility/src/files/fasta-fastq-v1.H :
540 utility/src/kmers-v1/kmers-iterator.H :
541 utility/src/kmers-v1/kmers-writer.H utility/src/kmers-v1/kmers-files.H :
542 utility/src/kmers-v1/kmers-writer-block.H :
543 utility/src/kmers-v1/kmers-writer-stream.H :
544 utility/src/kmers-v1/kmers-reader.H utility/src/kmers-v1/kmers-lookup.H :
545 utility/src/sequence.H utility/src/sequence/sequence-v1.H :
546 utility/src/sequence/dnaSeq-v1.H utility/src/sequence/dnaSeqFile-v1.H :
547 utility/src/htslib/hts/sam.h utility/src/htslib/hts/hts.h :
548 utility/src/htslib/hts/hts_defs.h utility/src/htslib/hts/hts_log.h :
549 utility/src/htslib/hts/kstring.h /usr/include/c++/13/stdlib.h :
550 utility/src/htslib/hts/kroundup.h utility/src/htslib/hts/hts_endian.h :
551 utility/src/sequence/dnaSeq-v1.H utility/src/kmers-v2/kmers-tiny.H :
552 utility/src/kmers-v2/kmers-histogram.H :
553 utility/src/kmers-v2/kmers-iterator.H :
554 utility/src/kmers-v2/kmers-writer.H utility/src/kmers-v2/kmers-files.H :
555 utility/src/kmers-v2/kmers-writer-block.H :
556 utility/src/kmers-v2/kmers-writer-stream.H :
557 utility/src/kmers-v2/kmers-reader.H utility/src/kmers-v2/kmers-lookup.H :