Mercurial > repos > fubar > microsatbed

comparison seqrequester/src/utility/README.licenses @ 1:1085e094cf5f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 7ceb6658309a7ababe622b5d92e729e5470e22f0-dirty
author fubar
date Sat, 13 Jul 2024 12:39:06 +0000
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0:dd71d3167476 1:1085e094cf5f
1
2 This software constitutes a joint work and the contributions of individual
3 authors are subject to different licenses. Contributions and licenses are
4 listed in the applicable source files, with specific details on each
5 individual contribution captured in the revision control system.
6
7 --
8 For all code, except as indicated otherwise:
9
10 PUBLIC DOMAIN NOTICE
11
12 This software is "United States Government Work" under the terms of the
13 United States Copyright Act. It was written as part of the authors'
14 official duties for the United States Government and thus cannot be
15 copyrighted. This software is freely available to the public for use
16 without a copyright notice. Restrictions cannot be placed on its present or
17 future use.
18
19 Although all reasonable efforts have been taken to ensure the accuracy and
20 reliability of the software and associated data, the National Human Genome
21 Research Institute (NHGRI), National Institutes of Health (NIH) and the
22 U.S. Government do not and cannot warrant the performance or results that
23 may be obtained by using this software or data. NHGRI, NIH and the
24 U.S. Government disclaim all warranties as to performance, merchantability
25 or fitness for any particular purpose.
26
27 Please cite the authors in any work or product based on this material.
28
29 --
30 For Edlib:
31
32 The MIT License (MIT)
33
34 Copyright (c) 2014 Martin Šošić
35
36 Permission is hereby granted, free of charge, to any person obtaining a
37 copy of this software and associated documentation files (the "Software"),
38 to deal in the Software without restriction, including without limitation
39 the rights to use, copy, modify, merge, publish, distribute, sublicense,
40 and/or sell copies of the Software, and to permit persons to whom the
41 Software is furnished to do so, subject to the following conditions:
42
43 The above copyright notice and this permission notice shall be included in
44 all copies or substantial portions of the Software.
45
46 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
47 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
48 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
49 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
50 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
51 FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
52 DEALINGS IN THE SOFTWARE.
53
54 --
55 For the MD5 Message-Digest Algorithm:
56
57 Copyright (C) 1991-2, RSA Data Security, Inc. Created 1991. All rights
58 reserved.
59
60 License to copy and use this software is granted provided that it is
61 identified as the "RSA Data Security, Inc. MD5 Message-Digest Algorithm" in
62 all material mentioning or referencing this software or this function.
63
64 License is also granted to make and use derivative works provided that such
65 works are identified as "derived from the RSA Data Security, Inc. MD5
66 Message-Digest Algorithm" in all material mentioning or referencing the
67 derived work.
68
69 RSA Data Security, Inc. makes no representations concerning either the
70 merchantability of this software or the suitability of this software for
71 any particular purpose. It is provided "as is" without express or implied
72 warranty of any kind.
73
74 These notices must be retained in any copies of any part of this
75 documentation and/or software.
76
77 --
78 For MT19937:
79
80 Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura, All
81 rights reserved.
82
83 Redistribution and use in source and binary forms, with or without
84 modification, are permitted provided that the following conditions are
85 met:
86
87 1. Redistributions of source code must retain the above copyright notice,
88 this list of conditions and the following disclaimer.
89
90 2. Redistributions in binary form must reproduce the above copyright
91 notice, this list of conditions and the following disclaimer in the
92 documentation and/or other materials provided with the distribution.
93
94 3. The names of its contributors may not be used to endorse or promote
95 products derived from this software without specific prior written
96 permission.
97
98 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
99 IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
100 THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
101 PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
102 CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
103 EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
104 PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
105 PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
106 LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
107 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
108 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
109
110 --
111 For libbacktrace:
112
113 Copyright (C) 2012-2016 Free Software Foundation, Inc.
114
115 Redistribution and use in source and binary forms, with or without
116 modification, are permitted provided that the following conditions are met:
117
118 (1) Redistributions of source code must retain the above copyright
119 notice, this list of conditions and the following disclaimer.
120
121 (2) Redistributions in binary form must reproduce the above copyright
122 notice, this list of conditions and the following disclaimer in
123 the documentation and/or other materials provided with the
124 distribution.
125
126 (3) The name of the author may not be used to endorse or promote
127 products derived from this software without specific prior
128 written permission.
129
130 THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
131 IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
132 OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN
133 NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
134 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
135 TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
136 PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
137 LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
138 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
139 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
140
141 --
142 For SSW Library (align-ssw.C and align-ssw.H):
143
144 The MIT License
145
146 Copyright (c) 2012-2015 Boston College.
147
148 Permission is hereby granted, free of charge, to any person obtaining
149 a copy of this software and associated documentation files (the
150 "Software"), to deal in the Software without restriction, including
151 without limitation the rights to use, copy, modify, merge, publish,
152 distribute, sublicense, and/or sell copies of the Software, and to
153 permit persons to whom the Software is furnished to do so, subject to
154 the following conditions:
155
156 The above copyright notice and this permission notice shall be
157 included in all copies or substantial portions of the Software.
158
159 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
160 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
161 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
162 NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
163 BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
164 ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
165 CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
166 SOFTWARE.
167
168
169 The 2-clause BSD License
170
171 Copyright 2006 Michael Farrar.
172
173 Redistribution and use in source and binary forms, with or without
174 modification, are permitted provided that the following conditions are
175 met:
176
177 1. Redistributions of source code must retain the above copyright
178 notice, this list of conditions and the following disclaimer.
179
180 2. Redistributions in binary form must reproduce the above copyright
181 notice, this list of conditions and the following disclaimer in the
182 documentation and/or other materials provided with the distribution.
183
184 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
185 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
186 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
187 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
188 HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
189 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
190 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
191 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
192 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
193 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
194 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
195
196 --
197 For parasail:
198
199 Pairwise Sequence Alignment Library (parasail)
200
201 Copyright (c) 2015, Battelle Memorial Institute
202
203 1. Battelle Memorial Institute (hereinafter Battelle) hereby grants
204 permission to any person or entity lawfully obtaining a copy of this
205 software and associated documentation files (hereinafter “the
206 Software”) to redistribute and use the Software in source and binary
207 forms, with or without modification. Such person or entity may use,
208 copy, modify, merge, publish, distribute, sublicense, and/or sell
209 copies of the Software, and may permit others to do so, subject to
210 the following conditions:
211
212 - Redistributions of source code must retain the above copyright
213 notice, this list of conditions and the following disclaimers.
214
215 - Redistributions in binary form must reproduce the above copyright
216 notice, this list of conditions and the following disclaimer in
217 the documentation and/or other materials provided with the
218 distribution.
219
220 - Other than as used herein, neither the name Battelle Memorial
221 Institute or Battelle may be used in any form whatsoever without
222 the express written consent of Battelle.
223
224 - Redistributions of the software in any form, and publications
225 based on work performed using the software should include the
226 following citation as a reference:
227
228 Daily, Jeff. (2016). Parasail: SIMD C library for global,
229 semi-global, and local pairwise sequence alignments. *BMC
230 Bioinformatics*, 17(1), 1-11. doi:10.1186/s12859-016-0930-z
231
232 2. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
233 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
234 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
235 FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL BATTELLE
236 OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
237 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
238 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
239 USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
240 ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
241 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
242 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
243 SUCH DAMAGE.
244