Mercurial > repos > fubar > tool_factory_2
comparison getlocalrpackages.py @ 13:00777b83aaca draft
Uploaded
| author | fubar |
|---|---|
| date | Thu, 15 Jan 2015 07:43:13 -0500 |
| parents | ce5ec1d989fd |
| children | dd6cf2ddaac7 |
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| 12:bd8acc5a7590 | 13:00777b83aaca |
|---|---|
| 1 import os | |
| 2 import subprocess | |
| 3 | |
| 4 def find_packages(prefix="package_r_"): | |
| 5 """ | |
| 6 """ | |
| 7 #locate env.sh | grep -i package_r_ | |
| 8 #/data/extended/galaxyJune14_2014/tool_dependency/readline/6.2/devteam/package_r_2_15_0/8ab0d08a3da1/env.sh | |
| 9 #/data/home/rlazarus/galaxy/tool_dependency_dir/R_3_1_1/3.1.1/fubar/package_r_3_1_1/5f1b8d22140a/env.sh | |
| 10 #/data/home/rlazarus/galaxy/tool_dependency_dir/R_3_1_1/3.1.1/fubar/package_r_3_1_1/d9964efbfbe3/env.sh | |
| 11 #/data/home/rlazarus/galtest/tool_dependency_dir/R_3_1_1/3.1.1/fubar/package_r_3_1_1/63cdb9b2234c/env.sh | |
| 12 eprefix = prefix | |
| 13 if prefix.find('/') <> -1: | |
| 14 eprefix = prefix.replace('/','\/') # for grep | |
| 15 cl = ['locate env.sh | grep -i %s' % eprefix,] | |
| 16 p = subprocess.Popen(cl, stdout=subprocess.PIPE, stderr=subprocess.PIPE,shell=True) | |
| 17 out, err = p.communicate() | |
| 18 fpaths = out.split('\n') | |
| 19 fpaths = [x for x in fpaths if len(x) > 1] | |
| 20 fver = [x.split(os.path.sep)[-4:-1] for x in fpaths] | |
| 21 # >>> foo.split(os.path.sep)[-4:-1] | |
| 22 # ['fubar', 'package_r_3_1_1', '63cdb9b2234c'] | |
| 23 res = [['%s rev %s owner %s' % (x[1],x[2],x[0]),fpaths[i],False] for i,x in enumerate(fver)] | |
| 24 res.insert(0,['Use default (system) interpreter','system',False]) | |
| 25 if len(res) > 1: | |
| 26 res[1][2] = True # selected if more than one | |
| 27 # return a triplet - user_sees,value,selected - all unselected if False | |
| 28 return res | |
| 29 | |
| 30 if __name__ == "__main__": | |
| 31 print find_packages() |