Mercurial > repos > fubar > tool_factory_2
comparison toolfactory/whoosh.sh @ 121:2050b2475ae5 draft
Uploaded
| author | fubar |
|---|---|
| date | Thu, 07 Jan 2021 09:24:17 +0000 |
| parents | 68fbdbe35f08 |
| children |
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| 120:0c6c3e10a8f4 | 121:2050b2475ae5 |
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| 1 # using the galaxy venv this seems to work | |
| 2 . /galaxy_venv/bin/activate | |
| 3 python scripts/tool_shed/build_ts_whoosh_index.py -c config/tool_shed.yml --config-section tool_shed | |
| 4 # eeesh. /etc/galaxy is where the actual galaxy.yml lives - despite other configs being where they might be expected | |
| 5 # fix tool_shed.yml to 0.0.0.0 and admin email | |
| 6 # add tgz to datatypes :( | |
| 7 # need to source a venv in /export/tool_deps/toolfactorydeps/0.01/fubar/toolfactorydeps/9e9428fe9134/env.sh | |
| 8 # as nothing was done by the setup_virtualenv step apparently. | |
| 9 # gcc and friends for planemo pip installation | |
| 10 # File "/galaxy-central/lib/galaxy/tool_util/verify/interactor.py", line 595, in <listcomp> | |
| 11 # test_user = [user for user in all_users if user["email"] == email][0] | |
| 12 # add local to tool_sheds_conf.xml | |
| 13 # <tool_sheds> | |
| 14 # <tool_shed name="local" url="http://localhost:9009"/> | |
| 15 # mercurial > 5.5!! | |
| 16 |