Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/rgToolFactory2.py @ 67:2cb06a59d84b draft

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author fubar
date Thu, 12 Nov 2020 09:24:59 +0000
parents bc1977b1f7b5
children afa3da660ae3
comparison
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66:bc1977b1f7b5 67:2cb06a59d84b
822 822
823 def planemo_test(self, genoutputs=True): 823 def planemo_test(self, genoutputs=True):
824 """planemo is a requirement so is available for testing 824 """planemo is a requirement so is available for testing
825 and for generating test outputs if command or test overrides are supplied 825 and for generating test outputs if command or test overrides are supplied
826 test outputs are sent to repdir for display 826 test outputs are sent to repdir for display
827 planemo test --engine docker_galaxy --database_type docker_postgres --galaxy_root /galaxy-central pyrevpos/pyrevpos.xml
827 """ 828 """
828 xreal = "%s.xml" % self.tool_name 829 xreal = "%s.xml" % self.tool_name
829 if os.path.exists(self.tlog): 830 if os.path.exists(self.tlog):
830 tout = open(self.tlog, "a") 831 tout = open(self.tlog, "a")
831 else: 832 else: