Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/rgToolFactory2.py @ 32:4d578c8c1613 draft

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passes planemo test
author fubar
date Fri, 07 Aug 2020 23:14:54 -0400
parents 6f48315c32c1
children 5052ac89c036
comparison
equal deleted inserted replaced
31:69eed330c91f 32:4d578c8c1613
29 import tarfile 29 import tarfile
30 import re 30 import re
31 import galaxyxml.tool as gxt 31 import galaxyxml.tool as gxt
32 import galaxyxml.tool.parameters as gxtp 32 import galaxyxml.tool.parameters as gxtp
33 import logging 33 import logging
34
34 35
35 36
36 progname = os.path.split(sys.argv[0])[1] 37 progname = os.path.split(sys.argv[0])[1]
37 myversion = 'V2.1 July 2020' 38 myversion = 'V2.1 July 2020'
38 verbose = True 39 verbose = True
298 exe = self.args.exe_package 299 exe = self.args.exe_package
299 assert exe is not None, 'No interpeter or executable passed in to makeXML' 300 assert exe is not None, 'No interpeter or executable passed in to makeXML'
300 tool = gxt.Tool(self.args.tool_name, self.tool_id, 301 tool = gxt.Tool(self.args.tool_name, self.tool_id,
301 self.args.tool_version, self.args.tool_desc, exe) 302 self.args.tool_version, self.args.tool_desc, exe)
302 tool.command_line_override = self.xmlcl 303 tool.command_line_override = self.xmlcl
303 print('#### tool cl override=',self.xmlcl)
304 if interp: 304 if interp:
305 tool.interpreter = interp 305 tool.interpreter = interp
306 if self.args.help_text: 306 if self.args.help_text:
307 helptext = open(self.args.help_text, 'r').readlines() 307 helptext = open(self.args.help_text, 'r').readlines()
308 helptext = [html_escape(x) for x in helptext] 308 helptext = [html_escape(x) for x in helptext]