Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/rgToolFactory2.py @ 139:6b414af9ca11 draft

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author fubar
date Sat, 17 Apr 2021 05:02:01 +0000
parents 1dba6c7687a9
children b36f12eb99dc
comparison
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138:1dba6c7687a9 139:6b414af9ca11
1056 else: 1056 else:
1057 tout = open(self.tlog, "w") 1057 tout = open(self.tlog, "w")
1058 cll = [ 1058 cll = [
1059 "planemo", 1059 "planemo",
1060 "test", 1060 "test",
1061 "--galaxy_python_version",
1062 self.args.python_version,
1061 "--conda_auto_init", 1063 "--conda_auto_init",
1062 "--test_data", 1064 "--test_data",
1063 os.path.abspath(self.testdir), 1065 os.path.abspath(self.testdir),
1064 "--test_output", 1066 "--test_output",
1065 os.path.abspath(tool_test_path), 1067 os.path.abspath(tool_test_path),
1150 a("--galaxy_api_key", default="fakekey") 1152 a("--galaxy_api_key", default="fakekey")
1151 a("--galaxy_root", default="/galaxy-central") 1153 a("--galaxy_root", default="/galaxy-central")
1152 a("--galaxy_venv", default="/galaxy_venv") 1154 a("--galaxy_venv", default="/galaxy_venv")
1153 a("--collection", action="append", default=[]) 1155 a("--collection", action="append", default=[])
1154 a("--include_tests", default=False, action="store_true") 1156 a("--include_tests", default=False, action="store_true")
1157 a("--python_version", default="3.9")
1155 args = parser.parse_args() 1158 args = parser.parse_args()
1156 assert not args.bad_user, ( 1159 assert not args.bad_user, (
1157 'UNAUTHORISED: %s is NOT authorized to use this tool until Galaxy \ 1160 'UNAUTHORISED: %s is NOT authorized to use this tool until Galaxy \
1158 admin adds %s to "admin_users" in the galaxy.yml Galaxy configuration file' 1161 admin adds %s to "admin_users" in the galaxy.yml Galaxy configuration file'
1159 % (args.bad_user, args.bad_user) 1162 % (args.bad_user, args.bad_user)