Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/rgToolFactory2.py @ 91:7176af503cdd draft

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Uploaded
author fubar
date Thu, 19 Nov 2020 23:38:29 +0000
parents dbbb9298a20f
children 6d122fd54cd0
comparison
equal deleted inserted replaced
90:4663732f341e 91:7176af503cdd
896 else: 896 else:
897 tout = open(self.tlog, "w") 897 tout = open(self.tlog, "w")
898 if genoutputs: 898 if genoutputs:
899 dummy, tfile = tempfile.mkstemp() 899 dummy, tfile = tempfile.mkstemp()
900 cll = [ 900 cll = [
901 ".","/home/biodocker/galaxy-central/.venv/bin/activate", "&&",
902 "planemo", 901 "planemo",
903 "test", 902 "test",
904 "--test_data", os.path.abspath(self.testdir), 903 "--test_data", os.path.abspath(self.testdir),
905 "--test_output", os.path.abspath(tool_test_path), 904 "--test_output", os.path.abspath(tool_test_path),
906 "--skip_venv", 905 "--skip_venv",
907 "--galaxy_root", 906 "--galaxy_root",
908 "/home/biodocker/galaxy-central", 907 self.args.galaxy_root,
909 "--update_test_data", 908 "--update_test_data",
910 os.path.abspath(xreal), 909 os.path.abspath(xreal),
911 ] 910 ]
912 p = subprocess.run( 911 p = subprocess.run(
913 cll, 912 cll,
917 stdout=dummy, 916 stdout=dummy,
918 ) 917 )
919 918
920 else: 919 else:
921 cll = [ 920 cll = [
922 ".","/home/biodocker/galaxy-central/.venv/bin/activate","&&",
923 "planemo", 921 "planemo",
924 "test", 922 "test",
925 "--test_data", os.path.abspath(self.testdir), 923 "--test_data", os.path.abspath(self.testdir),
926 "--test_output", os.path.abspath(tool_test_path), 924 "--test_output", os.path.abspath(tool_test_path),
927 "--skip_venv", 925 "--skip_venv",
928 "--galaxy_root", 926 "--galaxy_root",
929 "/home/biodocker/galaxy-central", 927 self.args.galaxy_root,
930 os.path.abspath(xreal), 928 os.path.abspath(xreal),
931 ] 929 ]
932 p = subprocess.run( 930 p = subprocess.run(
933 cll, shell=False, cwd=self.tooloutdir, stderr=tout, stdout=tout 931 cll, shell=False, cwd=self.tooloutdir, stderr=tout, stdout=tout
934 ) 932 )