Mercurial > repos > fubar > tool_factory_2
comparison toolfactory/rgToolFactory2.xml @ 131:72d190989c68 draft
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author | fubar |
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date | Fri, 09 Apr 2021 23:23:12 +0000 |
parents | e8e8071c9d0c |
children | 7805fdac70ed |
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130:e8e8071c9d0c | 131:72d190989c68 |
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79 <param name="input_help" type="text" value="" label="This will become help text on the form." > | 79 <param name="input_help" type="text" value="" label="This will become help text on the form." > |
80 </param> | 80 </param> |
81 <param name="input_CL" type="text" label="Positional: ordinal integer. Argparse: argument name. STDIN if the executable/script expects it" | 81 <param name="input_CL" type="text" label="Positional: ordinal integer. Argparse: argument name. STDIN if the executable/script expects it" |
82 help="If you will pass positional parameters, enter the integer ordinal for this parameter. If Argparse style, '--' will be prepended or '-' if single character" value=""> | 82 help="If you will pass positional parameters, enter the integer ordinal for this parameter. If Argparse style, '--' will be prepended or '-' if single character" value=""> |
83 </param> | 83 </param> |
84 <param name="input_repeat" type="hidden" checked="False" truevalue="1" falsevalue="0" label="Allow user to repeat this input as many times as needed." /> | 84 <param name="input_repeat" type="boolean" checked="False" truevalue="1" falsevalue="0" label="Allow user to repeat this input as many times as wanted - script/executable must parse these."/> |
85 </repeat> | 85 </repeat> |
86 <repeat name="history_outputs" title="one or more new history items output by the executable to appear in the user history after the tool runs" | 86 <repeat name="history_outputs" title="one or more new history items output by the executable to appear in the user history after the tool runs" |
87 help="The name will become a history item for users of the new tool you are making containing one of it's outputs"> | 87 help="The name will become a history item for users of the new tool you are making containing one of it's outputs"> |
88 <param name="history_name" type="text" label="Name for this output to appear in new history" optional="false" | 88 <param name="history_name" type="text" label="Name for this output to appear in new history" optional="false" |
89 help="No spaces! Argparse will also use this name as --[name]"> | 89 help="No spaces! Argparse will also use this name as --[name]"> |
171 </param> | 171 </param> |
172 <param name="param_CL" type="text" label="Positional ordinal | argparse argument name" | 172 <param name="param_CL" type="text" label="Positional ordinal | argparse argument name" |
173 help="Using positional parameters, enter the integer ordinal for this parameter on the command line. Using Argparse style, '--' will be prepended on the CL" value="" /> | 173 help="Using positional parameters, enter the integer ordinal for this parameter on the command line. Using Argparse style, '--' will be prepended on the CL" value="" /> |
174 <param name="param_CLprefixed" type="text" label="Override the generated default argparse name prefix if not empty - eg ----foo if needed" | 174 <param name="param_CLprefixed" type="text" label="Override the generated default argparse name prefix if not empty - eg ----foo if needed" |
175 help="Some targets like Planemo expect an unadorned action like 'test' before --galaxy_root." value="" /> | 175 help="Some targets like Planemo expect an unadorned action like 'test' before --galaxy_root." value="" /> |
176 <param name="param_repeat" type="hidden" checked="False" truevalue="1" falsevalue="0" label="Allow user to repeat this as many times as needed." /> | 176 <param name="param_repeat" type="boolean" checked="False" truevalue="1" falsevalue="0" label="Allow user to repeat this as many times as needed." /> |
177 </repeat> | 177 </repeat> |
178 </section> | 178 </section> |
179 </xml> | 179 </xml> |
180 </macros> | 180 </macros> |
181 | 181 |
182 <requirements> | 182 <requirements> |
183 <requirement type="package" version="0.4.12">galaxyxml</requirement> | 183 <requirement type="package" version="0.4.13">galaxyxml</requirement> |
184 <requirement type="package" version="0.14.0">bioblend</requirement> | 184 <requirement type="package" version="0.14.0">bioblend</requirement> |
185 <requirement type="package" version="0.10.6">ephemeris</requirement> | 185 <requirement type="package" version="0.10.6">ephemeris</requirement> |
186 <requirement type="package" version="0.74.3">planemo</requirement> | 186 <requirement type="package" version="0.74.3">planemo</requirement> |
187 </requirements> | 187 </requirements> |
188 | 188 |
251 "type": "$apar.ap_type.param_type","CL": "$apar.param_CL","override": "$apar.param_CLprefixed", "repeat": "$apar.param_repeat"}' | 251 "type": "$apar.ap_type.param_type","CL": "$apar.param_CL","override": "$apar.param_CLprefixed", "repeat": "$apar.param_repeat"}' |
252 #end if | 252 #end if |
253 #end for | 253 #end for |
254 #end if | 254 #end if |
255 #for $intab in $io_param.ppass.io.history_inputs: | 255 #for $intab in $io_param.ppass.io.history_inputs: |
256 --input_files '{"name": "$intab.input_files", "CL": "$intab.input_CL", "format": "$intab.input_formats", "label": "$intab.input_label", "help": "$intab.input_help"}' | 256 --input_files '{"name": "$intab.input_files", "CL": "$intab.input_CL", "format": "$intab.input_formats", "label": "$intab.input_label", "help": "$intab.input_help", "repeat": "$intab.input_repeat"}' |
257 #end for | 257 #end for |
258 #for $otab in $io_param.ppass.io.history_outputs: | 258 #for $otab in $io_param.ppass.io.history_outputs: |
259 --output_files '{"name": "$otab.history_name", "format": "$otab.history_format", "CL": "$otab.history_CL", "test": "$otab.history_test"}' | 259 --output_files '{"name": "$otab.history_name", "format": "$otab.history_format", "CL": "$otab.history_CL", "test": "$otab.history_test"}' |
260 #end for | 260 #end for |
261 #for $collect in $io_param.ppass.io.collection_outputs: | 261 #for $collect in $io_param.ppass.io.collection_outputs: |