Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/rgToolFactory2.xml @ 85:933e68f8bdd2 draft

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Uploaded
author fubar
date Thu, 19 Nov 2020 03:29:30 +0000
parents 60df9669d01c
children 5d74a718b92d
comparison
equal deleted inserted replaced
84:5304cda01f60 85:933e68f8bdd2
156 --packages "$packages" 156 --packages "$packages"
157 #if $usescript.choosescript == "yes": 157 #if $usescript.choosescript == "yes":
158 --script_path "$runme" 158 --script_path "$runme"
159 --sysexe "$usescript.scriptrunner" 159 --sysexe "$usescript.scriptrunner"
160 #end if 160 #end if
161 --tool_name="$tool_name" --user_email="$__user_email__" --citations="$citeme" --parampass="$ppass.parampass" 161 --tool_name "$tool_name" --user_email "$__user_email__" --citations "$citeme" --parampass "$ppass.parampass"
162 162
163 #if str($makeMode.make_Tool)!="runonly": 163 #if str($makeMode.make_Tool)!="runonly":
164 --make_Tool="$makeMode.make_Tool" 164 --make_Tool "$makeMode.make_Tool"
165 --tool_desc="$makeMode.tool_desc" 165 --tool_desc "$makeMode.tool_desc"
166 --tool_version="$makeMode.tool_version" 166 --tool_version "$makeMode.tool_version"
167 --help_text="$helpme" 167 --help_text "$helpme"
168 --new_tool="$new_tool" 168 --new_tool "$new_tool"
169 --toolshed_api_key="$makeMode.toolshed_apikey" 169 --toolshed_api_key "$makeMode.toolshed_apikey"
170 --galaxy_api_key="$makeMode.galaxy_apikey" 170 --galaxy_api_key "$makeMode.galaxy_apikey"
171 --toolshed_url="$makeMode.toolshed_url" 171 --toolshed_url "$makeMode.toolshed_url"
172 --galaxy_url="$makeMode.galaxy_url" 172 --galaxy_url "$makeMode.galaxy_url"
173 #end if 173 #end if
174 #if $ppass.parampass != '0': 174 #if $ppass.parampass != '0':
175 #if str($ppass.edit_params) == "yes": 175 #if str($ppass.edit_params) == "yes":
176 --edit_additional_parameters 176 --edit_additional_parameters
177 #end if 177 #end if
178 #for apar in $ppass.additional_parameters: 178 #for apar in $ppass.additional_parameters:
179 --additional_parameters="$apar.param_name~~~$apar.param_value~~~$apar.param_label~~~$apar.param_help~~~$apar.param_type~~~$apar.param_CL~~~$apar.param_CLprefixed" 179 --additional_parameters "$apar.param_name~~~$apar.param_value~~~$apar.param_label~~~$apar.param_help~~~$apar.param_type~~~$apar.param_CL~~~$apar.param_CLprefixed"
180 #end for 180 #end for
181 #end if 181 #end if
182 #for $intab in $ppass.history_inputs: 182 #for $intab in $ppass.history_inputs:
183 --input_files="$intab.input_files~~~$intab.input_CL~~~$intab.input_formats~~~$intab.input_label~~~$intab.input_help" 183 --input_files "$intab.input_files~~~$intab.input_CL~~~$intab.input_formats~~~$intab.input_label~~~$intab.input_help"
184 #end for 184 #end for
185 #for $otab in $ppass.history_outputs: 185 #for $otab in $ppass.history_outputs:
186 --output_files "$otab.history_name~~~$otab.history_format~~~$otab.history_CL~~~$otab.history_test" 186 --output_files "$otab.history_name~~~$otab.history_format~~~$otab.history_CL~~~$otab.history_test"
187 #end for 187 #end for
188 --galaxy_root "$__root_dir__" 188 --galaxy_root "$__root_dir__"