Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/rgToolFactory2.py @ 87:dbbb9298a20f draft

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Uploaded
author fubar
date Thu, 19 Nov 2020 06:58:17 +0000
parents 5304cda01f60
children 7176af503cdd
comparison
equal deleted inserted replaced
86:5d74a718b92d 87:dbbb9298a20f
903 "test", 903 "test",
904 "--test_data", os.path.abspath(self.testdir), 904 "--test_data", os.path.abspath(self.testdir),
905 "--test_output", os.path.abspath(tool_test_path), 905 "--test_output", os.path.abspath(tool_test_path),
906 "--skip_venv", 906 "--skip_venv",
907 "--galaxy_root", 907 "--galaxy_root",
908 self.args.galaxy_root, 908 "/home/biodocker/galaxy-central",
909 "--update_test_data", 909 "--update_test_data",
910 os.path.abspath(xreal), 910 os.path.abspath(xreal),
911 ] 911 ]
912 p = subprocess.run( 912 p = subprocess.run(
913 cll, 913 cll,
924 "test", 924 "test",
925 "--test_data", os.path.abspath(self.testdir), 925 "--test_data", os.path.abspath(self.testdir),
926 "--test_output", os.path.abspath(tool_test_path), 926 "--test_output", os.path.abspath(tool_test_path),
927 "--skip_venv", 927 "--skip_venv",
928 "--galaxy_root", 928 "--galaxy_root",
929 self.args.galaxy_root, 929 "/home/biodocker/galaxy-central",
930 os.path.abspath(xreal), 930 os.path.abspath(xreal),
931 ] 931 ]
932 p = subprocess.run( 932 p = subprocess.run(
933 cll, shell=False, cwd=self.tooloutdir, stderr=tout, stdout=tout 933 cll, shell=False, cwd=self.tooloutdir, stderr=tout, stdout=tout
934 ) 934 )
963 if genoutputs: 963 if genoutputs:
964 dummy, tfile = tempfile.mkstemp() 964 dummy, tfile = tempfile.mkstemp()
965 cll = [ 965 cll = [
966 "planemo", 966 "planemo",
967 "test", 967 "test",
968 "--conda_dependency_resolution",
969 "--test_data", os.path.abspath(self.testdir), 968 "--test_data", os.path.abspath(self.testdir),
970 "--test_output", os.path.abspath(tool_test_path), 969 "--test_output", os.path.abspath(tool_test_path),
971 "--skip_venv", 970 "--skip_venv",
972 "--galaxy_root", 971 "--galaxy_root",
973 self.args.galaxy_root, 972 self.args.galaxy_root,
984 983
985 else: 984 else:
986 cll = [ 985 cll = [
987 "planemo", 986 "planemo",
988 "test", 987 "test",
989 "--conda_dependency_resolution",
990 "--test_data", os.path.abspath(self.testdir), 988 "--test_data", os.path.abspath(self.testdir),
991 "--test_output", os.path.abspath(tool_test_path), 989 "--test_output", os.path.abspath(tool_test_path),
992 "--skip_venv", 990 "--skip_venv",
993 "--galaxy_root", 991 "--galaxy_root",
994 self.args.galaxy_root, 992 self.args.galaxy_root,