Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/rgToolFactory2.xml @ 130:e8e8071c9d0c draft

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author fubar
date Tue, 06 Apr 2021 03:12:56 +0000
parents c35ff02652bf
children 72d190989c68
comparison
equal deleted inserted replaced
129:c35ff02652bf 130:e8e8071c9d0c
79 <param name="input_help" type="text" value="" label="This will become help text on the form." > 79 <param name="input_help" type="text" value="" label="This will become help text on the form." >
80 </param> 80 </param>
81 <param name="input_CL" type="text" label="Positional: ordinal integer. Argparse: argument name. STDIN if the executable/script expects it" 81 <param name="input_CL" type="text" label="Positional: ordinal integer. Argparse: argument name. STDIN if the executable/script expects it"
82 help="If you will pass positional parameters, enter the integer ordinal for this parameter. If Argparse style, '--' will be prepended or '-' if single character" value=""> 82 help="If you will pass positional parameters, enter the integer ordinal for this parameter. If Argparse style, '--' will be prepended or '-' if single character" value="">
83 </param> 83 </param>
84 <param name="input_repeat" type="boolean" checked="False" truevalue="1" falsevalue="0" label="Allow user to repeat this input as many times as needed." /> 84 <param name="input_repeat" type="hidden" checked="False" truevalue="1" falsevalue="0" label="Allow user to repeat this input as many times as needed." />
85 </repeat> 85 </repeat>
86 <repeat name="history_outputs" title="one or more new history items output by the executable to appear in the user history after the tool runs" 86 <repeat name="history_outputs" title="one or more new history items output by the executable to appear in the user history after the tool runs"
87 help="The name will become a history item for users of the new tool you are making containing one of it's outputs"> 87 help="The name will become a history item for users of the new tool you are making containing one of it's outputs">
88 <param name="history_name" type="text" label="Name for this output to appear in new history" optional="false" 88 <param name="history_name" type="text" label="Name for this output to appear in new history" optional="false"
89 help="No spaces! Argparse will also use this name as --[name]"> 89 help="No spaces! Argparse will also use this name as --[name]">
171 </param> 171 </param>
172 <param name="param_CL" type="text" label="Positional ordinal | argparse argument name" 172 <param name="param_CL" type="text" label="Positional ordinal | argparse argument name"
173 help="Using positional parameters, enter the integer ordinal for this parameter on the command line. Using Argparse style, '--' will be prepended on the CL" value="" /> 173 help="Using positional parameters, enter the integer ordinal for this parameter on the command line. Using Argparse style, '--' will be prepended on the CL" value="" />
174 <param name="param_CLprefixed" type="text" label="Override the generated default argparse name prefix if not empty - eg ----foo if needed" 174 <param name="param_CLprefixed" type="text" label="Override the generated default argparse name prefix if not empty - eg ----foo if needed"
175 help="Some targets like Planemo expect an unadorned action like 'test' before --galaxy_root." value="" /> 175 help="Some targets like Planemo expect an unadorned action like 'test' before --galaxy_root." value="" />
176 <param name="param_repeat" type="hidden" checked="False" truevalue="1" falsevalue="0" label="Allow user to repeat this as many times as needed." />
176 </repeat> 177 </repeat>
177 </section> 178 </section>
178 </xml> 179 </xml>
179 </macros> 180 </macros>
180 181
245 #end for 246 #end for
246 ] 247 ]
247 }' 248 }'
248 #else: 249 #else:
249 --additional_parameters '{"name": "$apar.param_name", "value": "$apar.ap_type.param_value", "label": "$apar.param_label", "help": "$apar.param_help", 250 --additional_parameters '{"name": "$apar.param_name", "value": "$apar.ap_type.param_value", "label": "$apar.param_label", "help": "$apar.param_help",
250 "type": "$apar.ap_type.param_type","CL": "$apar.param_CL","override": "$apar.param_CLprefixed" }' 251 "type": "$apar.ap_type.param_type","CL": "$apar.param_CL","override": "$apar.param_CLprefixed", "repeat": "$apar.param_repeat"}'
251 #end if 252 #end if
252 #end for 253 #end for
253 #end if 254 #end if
254 #for $intab in $io_param.ppass.io.history_inputs: 255 #for $intab in $io_param.ppass.io.history_inputs:
255 --input_files '{"name": "$intab.input_files", "CL": "$intab.input_CL", "format": "$intab.input_formats", "label": "$intab.input_label", "help": "$intab.input_help", "repeat": "$intab.input_repeat"}' 256 --input_files '{"name": "$intab.input_files", "CL": "$intab.input_CL", "format": "$intab.input_formats", "label": "$intab.input_label", "help": "$intab.input_help"}'
256 #end for 257 #end for
257 #for $otab in $io_param.ppass.io.history_outputs: 258 #for $otab in $io_param.ppass.io.history_outputs:
258 --output_files '{"name": "$otab.history_name", "format": "$otab.history_format", "CL": "$otab.history_CL", "test": "$otab.history_test"}' 259 --output_files '{"name": "$otab.history_name", "format": "$otab.history_format", "CL": "$otab.history_CL", "test": "$otab.history_test"}'
259 #end for 260 #end for
260 #for $collect in $io_param.ppass.io.collection_outputs: 261 #for $collect in $io_param.ppass.io.collection_outputs: