Mercurial > repos > fubar > tool_factory_2
comparison toolfactory/docker/tfwelcome.html @ 46:f8700bed1e17 draft
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| author | fubar |
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| date | Tue, 18 Aug 2020 08:25:43 -0400 |
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| 45:668c37cc8962 | 46:f8700bed1e17 |
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| 1 <!DOCTYPE html> | |
| 2 <html lang="en"> | |
| 3 <head> | |
| 4 <meta charset="utf-8"> | |
| 5 <link rel="stylesheet" href="/static/style/base.css" type="text/css" /> | |
| 6 </head> | |
| 7 <body style="margin: 0"> | |
| 8 | |
| 9 <div class="jumbotron"> | |
| 10 <div class="container"> | |
| 11 <table><tr><td> | |
| 12 <h2>Hello, your <strong>Galaxy ToolFactory Docker</strong> container is running!</h2> | |
| 13 <strong>If you have not already done so, </strong> | |
| 14 From a handy linux console, please use <br> | |
| 15 <code>docker ps</code><br> | |
| 16 to find this container's name then use<br> | |
| 17 <code>docker exec [container name] config/post-start-actions.sh</code> | |
| 18 <br> | |
| 19 to load the sample tool generators to fully populate this container. | |
| 20 until the Dockerfile for this container figures out how to load a workflow during the build correctly.<br> | |
| 21 To run the workflow you need two small datasets until I get them loaded<br> | |
| 22 phiX.fasta from the Galaxy test-sample directory, and any smallish text file you want such as a readme or script.<br> | |
| 23 When you run the workflow, feed the fasta where it says, and the text file where you see rgToolFactory.py<br> | |
| 24 Send it to the same history and let it run.<br> | |
| 25 With any luck, you will have a history of examples to play with - use the rerun button to repopulate the ToolFactory form to illustrate<br> | |
| 26 positional and argparse style parameter passing for python, a simple bash script using STDIN/STDOUT and the perl (ugh) example from planemo<br> | |
| 27 <a target="_blank" href="https://wiki.galaxyproject.org/Admin/Config" class="btn btn-primary btn-lg">Configuring Galaxy »</a> | |
| 28 <a target="_blank" href="https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial" class="btn btn-primary btn-lg">Installing Tools »</a> | |
| 29 <a target="_parent" href="/tours/core.galaxy_ui" class="btn btn-primary btn-lg">Guided Tour »</a> | |
| 30 </td><td> | |
| 31 <div align=center> | |
| 32 <img src="./welcome_image.png" width="90%" height="90%" /> | |
| 33 </div> | |
| 34 | |
| 35 </td></tr></table> | |
| 36 </div> | |
| 37 </div> | |
| 38 | |
| 39 <div class="container"> | |
| 40 | |
| 41 <p class="lead"> | |
| 42 <a target="_blank" class="reference" href="http://galaxyproject.org/"> | |
| 43 Galaxy</a> is an open platform for supporting data intensive | |
| 44 research. Galaxy is developed by <a target="_blank" class="reference" href="http://wiki.galaxyproject.org/GalaxyTeam">The Galaxy Team</a> | |
| 45 with the support of <a target="_blank" class="reference" href="https://github.com/galaxyproject/galaxy/blob/dev/CONTRIBUTORS.md">many contributors</a>. | |
| 46 The Galaxy Docker project is supported by the University of Freiburg, part of de.NBI. | |
| 47 </p> | |
| 48 | |
| 49 <footer> | |
| 50 The <a target="_blank" class="reference" href="http://galaxyproject.org/">Galaxy Project</a> | |
| 51 is supported in part by <a target="_blank" class="reference" href="http://www.genome.gov">NHGRI</a>, | |
| 52 <a target="_blank" class="reference" href="http://www.nsf.gov">NSF</a>, | |
| 53 <a target="_blank" class="reference" href="http://www.huck.psu.edu">The Huck Institutes of the Life Sciences</a>, | |
| 54 <a target="_blank" class="reference" href="http://www.ics.psu.edu">The Institute for CyberScience at Penn State</a>, | |
| 55 and <a target="_blank" class="reference" href="http://www.jhu.edu/">Johns Hopkins University</a>. | |
| 56 </footer> | |
| 57 | |
| 58 </div> | |
| 59 | |
| 60 </body> | |
| 61 </html> |