Mercurial > repos > fubar > tool_factory_2
diff toolfactory/rgToolFactory2.py @ 138:1dba6c7687a9 draft
Uploaded
author | fubar |
---|---|
date | Wed, 14 Apr 2021 07:05:22 +0000 |
parents | 63d15caea378 |
children | 6b414af9ca11 |
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--- a/toolfactory/rgToolFactory2.py Tue Apr 13 03:06:27 2021 +0000 +++ b/toolfactory/rgToolFactory2.py Wed Apr 14 07:05:22 2021 +0000 @@ -1044,9 +1044,9 @@ supplied test outputs are sent to repdir for display """ penv = os.environ - pconfig = os.path.join(self.args.tool_dir,'.planemo.yml') + pconfig = os.path.join(self.args.tool_dir, '.planemo.yml') penv["PLANEMO_GLOBAL_CONFIG_PATH"] = pconfig - self.set_planemo_galaxy_root(self.args.galaxy_root,config_path=pconfig) + self.set_planemo_galaxy_root(self.args.galaxy_root, config_path=pconfig) xreal = "%s.xml" % self.tool_name tool_test_path = os.path.join( self.repdir, f"{self.tool_name}_planemo_test_report.html" @@ -1071,7 +1071,7 @@ p = subprocess.run( cll, shell=False, - env = penv, + env=penv, cwd=self.tooloutdir, stderr=tout, stdout=tout, @@ -1081,7 +1081,7 @@ def set_planemo_galaxy_root(self, galaxyroot='/galaxy-central', config_path=".planemo.yml"): # bug in planemo - bogus '--dev-wheels' passed to run_tests.sh as at april 2021 - need a fiddled copy so it is ignored until fixed - CONFIG_TEMPLATE = f"""## Planemo Global Configuration File. + CONFIG_TEMPLATE = """## Planemo Global Configuration File. ## Everything in this file is completely optional - these values can all be ## configured via command line options for the corresponding commands.