Mercurial > repos > fubar > tool_factory_2
diff toolfactory/rgToolFactory2.xml @ 112:5509dc4c1cf2 draft
Uploaded
author | fubar |
---|---|
date | Sun, 29 Nov 2020 10:34:48 +0000 |
parents | 223b78754735 |
children | 6873c211b250 |
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--- a/toolfactory/rgToolFactory2.xml Sun Nov 29 07:51:53 2020 +0000 +++ b/toolfactory/rgToolFactory2.xml Sun Nov 29 10:34:48 2020 +0000 @@ -241,8 +241,8 @@ optional="false" help="Use :[ver] for specific version - 'bwa:0.17.0'. Default is latest. Will be used every time the tool is (re)run. Only Conda is currently supported" /> <conditional name="usescript"> - <param name="choosescript" type="select" display="radio" label="Supply a script to either a dependency (e.g. python/R/bash) or a system executable such as Bash" - help = "For script interpreters like Python or bash. Parameters and i/o specified below must match script's expectations - if you pass parameters, the script must deal with them"> + <param name="choosescript" type="select" display="radio" label="Supply a script for a dependency (e.g. python/R/bash) or a system executable such as Bash" + help = "For script interpreters like Python or bash, parameters and i/o specified below must match script's expectations - if you pass parameters, the script must deal with them"> <option value="no">No script required for this tool - just pass parameters on the command line to the first dependency listed above</option> <option value="yes" selected="true">Yes, a script is ready to be pasted below</option> </param> @@ -251,7 +251,7 @@ <param name="scriptrunner" type="hidden" value="" /> </when> <when value="yes"> - <param name="scriptrunner" type="text" value="" label="Interpreter for the script pasted below - eg bash or python. Can be one of the dependencies named above or a system executable" + <param name="scriptrunner" type="text" value="" label="Interpreter for the script - eg bash or python. Can be one of the dependencies named above or a system executable" help="Scripts are interpreted by the executable named here. Use bash for bash scripts, or a conda dependency such as R or Python for those scripts"> <sanitizer invalid_char=""> <valid initial="string.letters,string.digits"> @@ -259,7 +259,7 @@ </valid> </sanitizer> </param> - <param name="dynScript" type="text" area="True" value="" label="Script for executable below to interpret. It can be one of the Conda dependency names " + <param name="dynScript" type="text" area="True" value="" label="Script for executable above to interpret. It can be one of the Conda dependency names " help="Script must handle all i/o and parameters as specified below using the parameters and passing method chosen below"> <sanitizer> <valid initial="string.printable">