Mercurial > repos > fubar > tool_factory_2
diff rgToolFactory2.xml @ 2:6a3c292412fa draft
Uploaded
author | fubar |
---|---|
date | Sun, 11 Jan 2015 21:32:15 -0500 |
parents | 323982517b30 |
children | ce5ec1d989fd |
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--- a/rgToolFactory2.xml Sat Jan 10 19:39:33 2015 -0500 +++ b/rgToolFactory2.xml Sun Jan 11 21:32:15 2015 -0500 @@ -40,10 +40,12 @@ #else: --output_dir "." #end if - #if $input_tab != 'None': + #if len($input_tab) != 0: --input_formats "$input_formats" - #for intab in $input_tab: - --input_tab "$intab,$intab.name" + #for $intab in $input_tab: + #if $intab.ext != 'data': + --input_tab "${intab},${intab.name}" + #end if #end for #end if #end if @@ -153,34 +155,34 @@ <mapping initial="none"/> </sanitizer> </param> - <param name="param_type" type="select" label="Select the type for this parameter"> + <param name="param_type" type="select" label="Select the type for this parameter"> <option value="text" selected="true">text</option> <option value="integer">integer</option> <option value="float">float</option> <option value="file">file</option> <option value="library_data">library_data</option> - </param> - <param name="param_value" type="text" value="parameter_value" label="Enter this parameter's default value" size="60" + </param> + <param name="param_value" type="text" value="parameter_value" label="Enter this parameter's default value" size="60" help="Note that commas and double quotes cannot be used in this text field - please work around this technical limitation" > <sanitizer invalid_char=""> <valid initial="string.printable"> <remove value=','/> <remove value='"'/> </valid> <mapping initial="none"/> </sanitizer> - </param> - <param name="param_label" type="text" value="parameter_label" label="Enter this parameter's label for the form" size="60" - help="Note that commas and double quotes cannot be used in this text field - please creatively work around this technical limitation" > + </param> + <param name="param_label" type="text" value="parameter_label" label="Enter this parameter's label for the form" size="60" + help="Note that commas and double quotes cannot be used in this text field - please creatively work around this technical limitation" > <sanitizer invalid_char=""> <valid initial="string.printable"> <remove value=','/> <remove value='"'/> </valid> <mapping initial="none"/> </sanitizer> - </param> - <param name="param_help" type="text" value="parameter_help" label="Help for this parameter" - help="Note that commas and double quotes cannot be used in this text field - please work around this technical limitation" size="60"> + </param> + <param name="param_help" type="text" value="parameter_help" label="Help for this parameter" + help="Note that commas and double quotes cannot be used in this text field - please work around this technical limitation" size="60"> <sanitizer invalid_char=""> <valid initial="string.printable"> <remove value=','/> <remove value='"'/> </valid> <mapping initial="none"/> </sanitizer> - </param> + </param> </repeat> <param name="dynScript" label="Cut and paste the script to be executed here" type="text" value="" area="True" size="20x120" help="Script must deal with three command line parameters: please cut and paste from examples below for the appropriate scripting language"> @@ -394,7 +396,6 @@ ]]> -**Citation** Paper_ : @@ -403,7 +404,6 @@ Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573 - **Licensing** Copyright Ross Lazarus (ross period lazarus at gmail period com) May 2012 @@ -417,7 +417,9 @@ </help> - +<citations> + <citation type="doi">doi: 10.1093/bioinformatics/bts573</citation> +</citations> </tool>