--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docker/Dockerfile	Sun Aug 16 08:33:09 2020 -0400
@@ -0,0 +1,46 @@
+# Galaxy - Toolshed Docker image
+# Derived from bgruening stable galaxy 
+# VERSION       0.2
+# patches startup so the below will install a workflow dropped into $GALAXY_ROOT/workflows
+# use docker run -p 8080:80  -d -e GALAXY_AUTO_UPDATE_WORKFLOWS=/galaxy-central/workflows/TF_sample_wf.ga -v /home/ubuntu/galaxy_storage/:/export/  toolfactory
+FROM bgruening/galaxy-stable
+MAINTAINER Ross Lazarus ross.lazarus@gmail.com
+
+ENV GALAXY_CONFIG_BRAND=ToolFactory
+ENV GALAXY_LOGGING="full"
+
+# RUN apt-get update -y && apt-get install -y build-essential gcc apt-utils
+# needed for planemo build
+
+RUN /galaxy_venv/bin/python -m pip install --upgrade pip
+# RUN /galaxy_venv/bin/python -m pip install planemo
+
+# RUN add-tool-shed --url 'http://testtoolshed.g2.bx.psu.edu/' --name 'Test Tool Shed'
+ADD my_tool_list.yml $GALAXY_ROOT/config/toolfactory_tools.yaml
+ENV GALAXY_AUTO_UPDATE_TOOLS=$GALAXY_ROOT/config/toolfactory_tools.yaml
+
+# Add workflows to the Docker image
+RUN mkdir -p $GALAXY_ROOT/workflows
+ADD TF_example_wf.ga $GALAXY_ROOT/workflows/TF_example_wf.ga
+ADD post-start-actions.sh /export/post-start-actions.sh
+RUN chmod a+xr /export/post-start-actions.sh \
+ && chmod a+xr $GALAXY_ROOT/workflows/TF_example_wf.ga 
+
+# Add Galaxy interactive tours
+# ADD ./rna-workbench-tours/* $GALAXY_ROOT/config/plugins/tours/
+# Add data library definition file
+# ADD library_data.yaml $GALAXY_ROOT/library_data.yaml
+# cleanup dance
+RUN apt-get autoremove -y && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* && rm -rf ~/.cache/ \
+    && find $GALAXY_ROOT/ -name '*.pyc' -delete | true \
+    && find /usr/lib/ -name '*.pyc' -delete | true \
+    && find /var/log/ -name '*.log' -delete | true \
+    && find $GALAXY_VIRTUAL_ENV -name '*.pyc' -delete | true \
+    && rm -rf /tmp/* /root/.cache/ /var/cache/* $GALAXY_ROOT/client/node_modules/ $GALAXY_VIRTUAL_ENV/src/ /home/galaxy/.cache/ /home/galaxy/.npm
+ENV GALAXY_DEFAULT_ADMIN_USER=''
+VOLUME ["/export/"]
+EXPOSE :80
+EXPOSE :21
+EXPOSE :8800
+CMD ["/usr/bin/startup"]
+