Mercurial > repos > fubar > tool_factory_2
diff toolfactory/rgToolFactory2.py @ 57:d21517a36db8 draft
Uploaded
author | fubar |
---|---|
date | Thu, 22 Oct 2020 00:56:46 +0000 |
parents | 68fbdbe35f08 |
children | 881bd8c81ac9 |
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--- a/toolfactory/rgToolFactory2.py Tue Oct 20 03:20:32 2020 +0000 +++ b/toolfactory/rgToolFactory2.py Thu Oct 22 00:56:46 2020 +0000 @@ -629,7 +629,6 @@ else: # work around special case - stdin and write to stdout sti = open(self.infiles[0][IPATHPOS], "rb") sto = open(self.outfiles[0][ONAMEPOS], "wb") - # must use shell to redirect p = subprocess.run(self.cl, shell=False, stdout=sto, stdin=sti) retval = p.returncode sto.close() @@ -696,6 +695,7 @@ cll = [ "planemo", "test", + "--skip_venv", "--galaxy_root", self.args.galaxy_root, "--update_test_data", @@ -703,7 +703,7 @@ ] else: cll = ["planemo", "test", "--galaxy_root", - self.args.galaxy_root, + self.args.galaxy_root, "--skip_venv", xreal,] p = subprocess.run( cll, shell=False, cwd=self.tooloutdir, stderr=tout, stdout=tout