Mercurial > repos > fubar > tool_factory_2
diff toolfactory/rgToolFactory2.py @ 118:e43c43396a70 draft
Uploaded
author | fubar |
---|---|
date | Fri, 11 Dec 2020 04:23:48 +0000 |
parents | b1a29d3d50d6 |
children | 8ea1133b9d9a |
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--- a/toolfactory/rgToolFactory2.py Sun Dec 06 01:21:06 2020 +0000 +++ b/toolfactory/rgToolFactory2.py Fri Dec 11 04:23:48 2020 +0000 @@ -571,11 +571,11 @@ safertext = "\n".join([cheetah_escape(x) for x in helptext]) if self.args.script_path: scr = [x for x in self.spacedScript if x.strip() > ""] - scr.insert(0,'\n------\n\nScript::\n') + scr.insert(0,'\n------\n\n\nScript::\n') if len(scr) > 300: scr = ( scr[:100] - + [">300 lines - stuff deleted", "......"] + + [" >300 lines - stuff deleted", " ......"] + scr[-100:] ) scr.append('\n') @@ -990,10 +990,8 @@ def main(): """ - This is a Galaxy wrapper. It expects to be called by a special purpose tool.xml as: - <command interpreter="python">rgBaseScriptWrapper.py --script_path "$scriptPath" - --tool_name "foo" --interpreter "Rscript" - </command> + This is a Galaxy wrapper. It expects to be called by a special purpose tool.xml + """ parser = argparse.ArgumentParser() a = parser.add_argument