changeset 77:1fa49a9a4ec5 draft

Uploaded
author fubar
date Mon, 16 Nov 2020 23:24:05 +0000
parents 46db8143adb7
children 89aca6c67405
files toolfactory/rgToolFactory2.xml toolfactory/testtf.sh toolfactory/whoosh.sh
diffstat 3 files changed, 4 insertions(+), 23 deletions(-) [+]
line wrap: on
line diff
--- a/toolfactory/rgToolFactory2.xml	Mon Nov 16 02:42:49 2020 +0000
+++ b/toolfactory/rgToolFactory2.xml	Mon Nov 16 23:24:05 2020 +0000
@@ -132,11 +132,10 @@
   </macros>
 
 <requirements>
-    <requirement type="package">galaxyxml</requirement>
-    <requirement type="package">bioblend</requirement>
-    <requirement type="package">planemo</requirement>
-    <container type="docker">quay.io/fubar2/toolfactorybiocontainer</container>
-</requirements>
+   <!--<requirement type="package" version="3.8.5" >python</requirement>-->
+   <requirement type="package" version="0.72.0" >planemo</requirement>
+   <requirement type="package" version="0.4.11" >galaxyxml</requirement>
+</requirements></requirements>
 
   <command ><![CDATA[
 #import os
--- a/toolfactory/testtf.sh	Mon Nov 16 02:42:49 2020 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-planemo test --no_cleanup --no_dependency_resolution --skip_venv --galaxy_root ~/galaxy ~/galaxy/tools/tool_makers/toolfactory &>foo
-
--- a/toolfactory/whoosh.sh	Mon Nov 16 02:42:49 2020 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,16 +0,0 @@
-# using the galaxy venv this seems to work
-. /galaxy_venv/bin/activate
-python scripts/tool_shed/build_ts_whoosh_index.py -c config/tool_shed.yml --config-section tool_shed
-# eeesh. /etc/galaxy is where the actual galaxy.yml lives - despite other configs being where they might be expected
-# fix tool_shed.yml to 0.0.0.0 and admin email
-# add tgz to datatypes :(
-# need to source a venv in /export/tool_deps/toolfactorydeps/0.01/fubar/toolfactorydeps/9e9428fe9134/env.sh
-# as nothing was done by the setup_virtualenv step apparently.
-# gcc and friends for planemo pip installation
-# File "/galaxy-central/lib/galaxy/tool_util/verify/interactor.py", line 595, in <listcomp>
-#   test_user = [user for user in all_users if user["email"] == email][0]
-# add local to tool_sheds_conf.xml
-# <tool_sheds>
-#    <tool_shed name="local" url="http://localhost:9009"/>
-# mercurial > 5.5!!
-