Mercurial > repos > fubar > toolfactory

comparison rgToolFactory.py @ 14:43ab59672f78 draft

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Uploaded
author fubar
date Thu, 20 Mar 2014 06:04:42 -0400
parents d5a5f9c2c108
children 824d21b5c773
comparison
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13:d5a5f9c2c108 14:43ab59672f78
89 verbose = False 89 verbose = False
90 debug = False 90 debug = False
91 toolFactoryURL = 'https://bitbucket.org/fubar/galaxytoolfactory' 91 toolFactoryURL = 'https://bitbucket.org/fubar/galaxytoolfactory'
92 92
93 # if we do html we need these dependencies 93 # if we do html we need these dependencies
94 toolhtmldep = """<?xml version="1.0"?> 94 toolhtmldepskel = """<?xml version="1.0"?>
95 <tool_dependency> 95 <tool_dependency>
96 <package name="ghostscript" version="9.10"> 96 <package name="ghostscript" version="9.10">
97 <repository name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" /> 97 <repository name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" />
98 </package> 98 </package>
99 <package name="graphicsmagick" version="1.3.18"> 99 <package name="graphicsmagick" version="1.3.18">
346 if self.opts.make_HTML: 346 if self.opts.make_HTML:
347 if self.opts.help_text: 347 if self.opts.help_text:
348 hlp = open(self.opts.help_text,'r').read() 348 hlp = open(self.opts.help_text,'r').read()
349 else: 349 else:
350 hlp = 'Please ask the tool author for help as none was supplied at tool generation\n' 350 hlp = 'Please ask the tool author for help as none was supplied at tool generation\n'
351 tooldeps = toolhtmldep % hlp 351 tooldepcontent = toolhtmldepskel % hlp
352 depf = open(os.path.join(tdir,'tool_dependencies.xml'),'w') 352 depf = open(os.path.join(tdir,'tool_dependencies.xml'),'w')
353 depf.write(hlp) 353 depf.write(tooldepcontent)
354 depf.write('\n') 354 depf.write('\n')
355 depf.close() 355 depf.close()
356 if self.opts.input_tab <> 'None': # no reproducible test otherwise? TODO: maybe.. 356 if self.opts.input_tab <> 'None': # no reproducible test otherwise? TODO: maybe..
357 testdir = os.path.join(tdir,'test-data') 357 testdir = os.path.join(tdir,'test-data')
358 os.mkdir(testdir) # make tests directory 358 os.mkdir(testdir) # make tests directory