Mercurial > repos > fubar > toolfactory

comparison rgToolFactory.py @ 21:abeec897b2d7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fubar
date Sun, 23 Mar 2014 08:11:54 -0400
parents 812871c1eaec
children 2983106e1460
comparison
equal deleted inserted replaced
20:812871c1eaec 21:abeec897b2d7
321 xdict['help'] = ''.join([x.lstrip(x) for x in xdict['help']]) 321 xdict['help'] = ''.join([x.lstrip(x) for x in xdict['help']])
322 else: 322 else:
323 xdict['help'] = 'Please ask the tool author for help as none was supplied at tool generation\n' 323 xdict['help'] = 'Please ask the tool author for help as none was supplied at tool generation\n'
324 coda = ['**Script**','Pressing execute will run the following code over your input file and generate some outputs in your history::'] 324 coda = ['**Script**','Pressing execute will run the following code over your input file and generate some outputs in your history::']
325 coda.append(self.indentedScript) 325 coda.append(self.indentedScript)
326 coda.append('**Attribution** This Galaxy tool was created by %s at %s\nusing the Galaxy Tool Factory.' % (self.opts.user_email,timenow())) 326 coda.append('\n**Attribution**\nThis Galaxy tool was created by %s at %s\nusing the Galaxy Tool Factory.\n' % (self.opts.user_email,timenow()))
327 coda.append('See %s for details of that project' % (toolFactoryURL)) 327 coda.append('See %s for details of that project' % (toolFactoryURL))
328 coda.append('Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team. ') 328 coda.append('Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team. ')
329 coda.append('Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573') 329 coda.append('Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573\n')
330 xdict['help'] = '%s\n%s' % (xdict['help'],'\n'.join(coda)) 330 xdict['help'] = '%s\n%s' % (xdict['help'],'\n'.join(coda))
331 if self.opts.tool_desc: 331 if self.opts.tool_desc:
332 xdict['tooldesc'] = '<description>%s</description>' % self.opts.tool_desc 332 xdict['tooldesc'] = '<description>%s</description>' % self.opts.tool_desc
333 else: 333 else:
334 xdict['tooldesc'] = '' 334 xdict['tooldesc'] = ''