Mercurial > repos > fubar > toolfactory_gtn
diff toolfactory/rgToolFactory2.xml @ 3:c4f192ec521c draft
Uploaded
author | fubar |
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date | Tue, 20 Apr 2021 05:30:52 +0000 |
parents | b65ec4f387b9 |
children |
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--- a/toolfactory/rgToolFactory2.xml Sun Apr 18 04:42:15 2021 +0000 +++ b/toolfactory/rgToolFactory2.xml Tue Apr 20 05:30:52 2021 +0000 @@ -64,8 +64,8 @@ </xml> <xml name="io"> <section name="io" title="Input and output files" expanded="true"> - <repeat name="history_inputs" title="zero or more input data files to pass on the command line to the executable." - help="USE SMALL SAMPLES for the new tool's test. Prompts will form a history item selector as input for users of this new tool"> + <repeat name="history_inputs" title="Inputs" min="0" + help="Input data files to pass on the command line to the executable. USE SMALL SAMPLES for the new tool's test. Prompts will form a history item selector as input for users of this new tool"> <param name="input_files" type="data" format="data" label="Select an input file from your history" multiple="false" help=""/> <param name="input_formats" type="select" multiple="true" label="Select the datatype(s) that your tool/script accepts as input" @@ -83,10 +83,10 @@ </param> <param name="input_repeat" type="boolean" checked="False" truevalue="1" falsevalue="0" label="Allow user to repeat this input as many times as wanted - script/executable must parse these."/> </repeat> - <repeat name="history_outputs" title="one or more new history items output by the executable to appear in the user history after the tool runs" - help="The name will become a history item for users of the new tool you are making containing one of it's outputs"> - <param name="history_name" type="text" label="Name for this output to appear in new history" optional="false" - help="No spaces! Argparse will also use this name as --[name]"> + <repeat name="history_outputs" min="1" title="Outputs" + help="New history items output by the executable to appear in the user history after the tool runs. The name will become a history item for users of the new tool you are making containing one of it's outputs"> + <param name="history_name" type="text" label="Output Name" optional="false" + help="Name used for this output in history. No spaces! Argparse will also use this name as --[name]"> <sanitizer invalid_char="_"> <valid initial="string.ascii_letters,string.digits" > <add value="_" /> @@ -99,15 +99,15 @@ <column name="value" index="0"/> </options> </param> - <param name="history_CL" type="text" label="Positional: ordinal integer. Use STDOUT if '>' required. Otherwise ignored if argparse because name is used" - help="If positional parameters, enter the integer ordinal expected for this parameter. If argparse, ignore unless STDOUT needed" value=""/> - <param name="history_test" type="text" label="Test pass decision criterion for this output compared to test generation" - help="Available options are diff:[lines], sim_size:[delta (integer) or delta_frac (float)" value="diff:0"/> + <param name="history_CL" type="text" label="Position" + help="Positional: ordinal integer or 'STDOUT' if '>' required. Otherwise ignored if argparse because name is used. If positional parameters, enter the integer ordinal expected for this parameter. If argparse, ignore unless STDOUT needed" value=""/> + <param name="history_test" type="text" label="Output test criteria" + help="Pass/fail decision criterion for this output compared to test generation. Available options are diff:[lines], sim_size:[delta (integer) or delta_frac (float)" value="diff:0"/> </repeat> - <repeat name="collection_outputs" title="zero or more new history collections to appear in the user history after the tool runs" - help="Hides outputs not needed for downstream tools such as images and intermediate reports." default="0"> - <param name="name" type="text" label="Name for new collection with all outputs not individually passed to history outputs" - help="No spaces! Script MUST create and fill a directory with the same name and the tool test MUST be overwritten - see the plotter example for hints"> + <repeat name="collection_outputs" title="Output Collections" min="0" + help="New history collections to appear in the user history after the tool runs. Hides outputs not needed for downstream tools such as images and intermediate reports." default="0"> + <param name="name" type="text" label="Name" + help="for new collection with all outputs not individually passed to history outputs. No spaces! Script MUST create and fill a directory with the same name and the tool test MUST be overwritten - see the plotter example for hints"> <sanitizer invalid_char="_"> <valid initial="string.ascii_letters,string.digits" > <add value="_" /> @@ -127,14 +127,14 @@ </section> </xml> <xml name="additparam"> - <section name="addparam" title="Executable or script settings passed on the command line other than I/O files" expanded="true"> + <section name="addparam" title="Arguments" help="Executable or script settings passed on the command line other than I/O files" expanded="true"> <param name="edit_params" type="select" display="radio" label="Make these settings on the generated tool form user editable?" help="If no, users will NOT be able to alter any additional parameters. If yes, these will appear on the tool form as text fields with no validation or sanitizing"> <option value="yes" selected="true">Yes, allow user to edit all additional parameters on the generated tool form</option> <option value="no">No - use the fixed values for all additional parameters - no user editing</option> </param> - <repeat name="additional_parameters" title="zero or more command line settings for the user to pass to the executable" - help="See examples below to see how these can be parsed by scripts in the various languages"> + <repeat name="additional_parameters" title="Command Line Paramters" min="0" + help="Command line settings for the user to pass to the executable. See examples below to see how these can be parsed by scripts in the various languages"> <param name="param_name" type="text" value="" label="Choose the name for this parameter - MUST not be blank!"> <sanitizer invalid_char=""> <valid initial="string.ascii_letters,string.digits"/> @@ -182,6 +182,7 @@ <requirements> <requirement type="package" version="0.4.14">galaxyxml</requirement> <requirement type="package" version="0.74.3">planemo</requirement> + <requirement type="package" version="0.10.6">ephemeris</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[