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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author fubar
date Tue, 07 Jun 2011 17:43:58 -0400
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cec2527697f6 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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1 This is a Galaxy tool wrapper for weblogo3 already available as a web app at the site below but neat as a Galaxy tool
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3 It generates sequence logos from fasta files such as the alignments generated by clustalw
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5 Note that the image for the help must be in static/images for it to show up on the tool form - it's the same image as goes in test-data
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7 **Installation**
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9 Make sure weblogo3 is installed in your system python and is available on the path for all your nodes
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11 Move the test data files to your galaxy root test-data
cec2527697f6 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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12 Move the xml file to a subdirectory of your tools folder (eg rgenetics/) and then add a line in your tool_conf.xml to point there.
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13 Run
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14 sh run_functional_tests.sh -id weblogo3
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15 to make sure the tests work
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cec2527697f6 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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17 then restart Galaxy and you should be good to go.
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20 **Attribution**
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cec2527697f6 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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22 Source for the weblogo3 python executable is at http://weblogo.berkeley.edu
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24 Written by Ross Lazarus for the Rgenetics project
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26 Copyright Ross Lazarus at gmail com 2011
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28 All rights reserved.
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29
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30 Released under the LGPL - see http://www.gnu.org/copyleft/lesser.html