Mercurial > repos > fubar > weblogo3
comparison weblogo3-91fa0a8ce39d/rgweblogo/tool_dependencies.xml @ 1:a76ecde597e1 draft
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author | fubar |
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date | Wed, 04 Dec 2013 19:58:06 -0500 |
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0:cec2527697f6 | 1:a76ecde597e1 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="numpy" version="1.7.1"> | |
4 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="ghostscript" version="9.07"> | |
7 <repository changeset_revision="c842299349c0" name="package_ghostscript_9_07" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
8 </package> | |
9 | |
10 <package name="package_weblogo" version="3.3"> | |
11 <install version="1.0"> | |
12 <actions> | |
13 <!-- populate the environment variables from the dependend repos --> | |
14 <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action> | |
15 <action type="shell_command">echo `ls -lt` && echo `pwd`</action> | |
16 | |
17 <action type="set_environment_for_install"> | |
18 <repository changeset_revision="c842299349c0" name="package_ghostscript_9_07" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | |
19 <package name="ghostscript" version="9.07" /> | |
20 </repository> | |
21 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | |
22 <package name="numpy" version="1.7.1" /> | |
23 </repository> | |
24 </action> | |
25 <!-- install weblogo --> | |
26 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
27 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH && | |
28 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> | |
29 <action type="set_environment"> | |
30 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
31 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | |
32 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
33 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
34 <environment_variable action="set_to" name="WEBLOGO_PATH">$INSTALL_DIR/bin/weblogo</environment_variable> | |
35 </action> | |
36 </actions> | |
37 </install> | |
38 <readme> | |
39 weblogo3 is a python version of the old weblogo2.8 or so. Requires numpy and ghostscript so these are installed if not already on your system - if that happens, please be patient | |
40 while numpy compiles - especially if the ATLAS libraries are being installed - which is not at present. | |
41 </readme> | |
42 </package> | |
43 </tool_dependency> |