Mercurial > repos > fubar > weblogo3
comparison rgweblogo/tool_dependencies.xml @ 3:fad187cb76fe draft
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author | fubar |
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date | Thu, 05 Dec 2013 00:56:04 -0500 |
parents | |
children | a8ddd04727f5 |
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2:ef1f89257fdb | 3:fad187cb76fe |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="numpy" version="1.7.1"> | |
4 <repository changeset_revision="796c0081adad" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="ghostscript" version="9.07"> | |
7 <repository changeset_revision="516712b2f0cb" name="package_ghostscript_9_07" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
8 </package> | |
9 | |
10 <package name="package_weblogo" version="3.3"> | |
11 <install version="1.0"> | |
12 <actions> | |
13 <!-- populate the environment variables from the dependend repos --> | |
14 <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action> | |
15 | |
16 <action type="set_environment_for_install"> | |
17 <repository changeset_revision="516712b2f0cb" name="package_ghostscript_9_07" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu/"> | |
18 <package name="ghostscript" version="9.07" /> | |
19 </repository> | |
20 <repository changeset_revision="796c0081adad" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu/"> | |
21 <package name="numpy" version="1.7.1" /> | |
22 </repository> | |
23 </action> | |
24 <!-- install weblogo --> | |
25 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
26 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH && | |
27 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> | |
28 <action type="set_environment"> | |
29 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
30 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | |
31 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
33 <environment_variable action="set_to" name="WEBLOGO_PATH">$INSTALL_DIR/bin/weblogo</environment_variable> | |
34 </action> | |
35 </actions> | |
36 </install> | |
37 <readme> | |
38 weblogo3 is a python version of the old weblogo2.8 or so. Requires numpy and ghostscript so these are installed if not already on your system - if that happens, please be patient | |
39 while numpy compiles - especially if the ATLAS libraries are being installed - which is not at present. | |
40 </readme> | |
41 </package> | |
42 </tool_dependency> |