Mercurial > repos > fubar2 > toolfactory_gtn
diff toolfactory/install_tf_demos.py @ 0:f288fab71d8b draft default tip
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author | fubar2 |
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date | Mon, 26 Apr 2021 04:18:54 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/toolfactory/install_tf_demos.py Mon Apr 26 04:18:54 2021 +0000 @@ -0,0 +1,42 @@ +import argparse +import urllib.request + +from bioblend import galaxy + +WF = "https://drive.google.com/uc?export=download&id=13xE8o7tucHGNA0qYkEP98FfUGl2wdOU5" +HIST = ( + "https://drive.google.com/uc?export=download&id=1V0ZN9ZBuqcGJvt2AP7s3g0q11uYEhdDB" +) +WF_FILE = "tf_workflow.ga" +HIST_FILE = "tf_history.tgz" + + +def _parser(): + parser = argparse.ArgumentParser() + parser.add_argument( + "-g", "--galaxy", help="URL of target galaxy", default="http://localhost:9090" + ) + parser.add_argument("-a", "--key", help="Galaxy admin key", default=None) + return parser + + +def main(): + """ + load the planemo tool_factory demonstration history and tool generating workflow + fails in planemo served galaxies because there seems to be no user in trans? + """ + args = _parser().parse_args() + urllib.request.urlretrieve(WF, WF_FILE) + urllib.request.urlretrieve(HIST, HIST_FILE) + assert args.key, "Need an administrative key for the target Galaxy supplied please" + gi = galaxy.GalaxyInstance( + url=args.galaxy, key=args.key, email="planemo@galaxyproject.org" + ) + x = gi.workflows.import_workflow_from_local_path(WF_FILE, publish=True) + print(f"installed {WF_FILE} Returned = {x}\n") + x = gi.histories.import_history(file_path=HIST_FILE) + print(f"installed {HIST_FILE} Returned = {x}\n") + + +if __name__ == "__main__": + main()