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+# GenAP2 Galaxy implementation of CellRanger-ATAC
+Disclaimer: This wrapper for CellRanger-ATAC is not developed or supported by 10x Genomics. This wrapper was written by scientists at GenAP to help facilitate usage of CellRanger tools inside of Galaxy.
+Please find the full, official 10x Genomics licensing information at : https://support.10xgenomics.com/docs/license.
+
+What is CellRanger ATAC?
+
+https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/what-is-cell-ranger-atac
+
+Naming convention of FASTQ files internally in Galaxy follows thes guidelines: 
+
+https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/using/fastq-input#rightname
+
+Installation:
+1) Install this wrapper via the Galaxy toolshed.
+2) CellRanger-ATAC (v2.0.0) is required for this wrapper and should be installed separately (see below). 
+
+To use this tool, we assume that cellranger-atac (v.2.0.0) is available to Galaxy on the system, via the command cellranger-atac. Unfortunately at this point, we cannot include Cellranger-ATAC as part of this wrapper due to Licensing and distribution limitations. For more information on how to install CellRanger-ATAC on your system, please see :
+https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/installation