Mercurial > repos > galaxy-australia > alphafold2

comparison alphafold.xml @ 17:5b85006245f3 draft

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planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 2e1eba8094c506a99a844546e8343849d3cef694
author galaxy-australia
date Wed, 31 May 2023 01:30:22 +0000
parents f9eb041c518c
children e4a053d67e24
comparison
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16:f9eb041c518c 17:5b85006245f3
1 <tool id="alphafold" name="Alphafold 2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="alphafold" name="Alphafold 2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <description> - AI-guided 3D structural prediction of proteins</description> 2 <description> - AI-guided 3D structural prediction of proteins</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">2.3.1</token> 4 <token name="@TOOL_VERSION@">2.3.1</token>
5 <token name="@TOOL_MINOR_VERSION@">2.3</token> 5 <token name="@TOOL_MINOR_VERSION@">2.3</token>
6 <token name="@VERSION_SUFFIX@">2</token> 6 <token name="@VERSION_SUFFIX@">3</token>
7 <import>macro_output.xml</import> 7 <import>macro_output.xml</import>
8 <import>macro_test_output.xml</import> 8 <import>macro_test_output.xml</import>
9 </macros> 9 </macros>
10 <edam_topics> 10 <edam_topics>
11 <edam_topic>topic_0082</edam_topic> 11 <edam_topic>topic_0082</edam_topic>
17 <xref type="bio.tools">alphafold_2</xref> 17 <xref type="bio.tools">alphafold_2</xref>
18 </xrefs> 18 </xrefs>
19 <requirements> 19 <requirements>
20 <container type="docker">neoformit/alphafold:v2.3.1_2</container> 20 <container type="docker">neoformit/alphafold:v2.3.1_2</container>
21 </requirements> 21 </requirements>
22 <required_files>
23 <include path="scripts/outputs.py" />
24 <include path="scripts/validate_fasta.py" />
25 <include path="alphafold.html" />
26 </required_files>
22 <command detect_errors="exit_code"><![CDATA[ 27 <command detect_errors="exit_code"><![CDATA[
23 28
24 ## Developers: to test with mock alphafold run, set `export PLANEMO_TESTING=1` 29 ## Developers: to test with mock alphafold run, set `export PLANEMO_TESTING=1`
25 ## in planemo's gx_venv_n/bin/activate script. AlphaFold outputs will be copied 30 ## in planemo's gx_venv_n/bin/activate script. AlphaFold outputs will be copied
26 ## from the test-data directory instead of running the tool. 31 ## from the test-data directory instead of running the tool.