Mercurial > repos > galaxy-australia > alphafold2

diff docker/README.md @ 1:6c92e000d684 draft

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"planemo upload for repository https://github.com/usegalaxy-au/galaxy-local-tools commit a510e97ebd604a5e30b1f16e5031f62074f23e86"
author galaxy-australia
date Tue, 01 Mar 2022 02:53:05 +0000
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+# What is this?
+
+These are `alphafold` git repos copied from:
+  - the `clairemcwhite/alphafold` docker container (originates from a fork/branch https://github.com/deisseroth-lab/alphafold/tree/cudnn-runtime)
+  - The upstream https://github.com/deepmind/alphafold
+
+### Diffs
+- According to [the closed pull request](https://github.com/deepmind/alphafold/pull/36), the main diff is updates to Dockerfile Cuda deps in the fork
+- These issues have since been resolved in the upstream
+- Can probably copy the new repo into the image in a new Dockerfile `FROM clairemcwhite/alphafold`
+- And hope that alphafold on pulsar can work with the new container!
+  (There were lots of dependency issues...)