--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macro_output.xml	Fri Mar 10 02:48:07 2023 +0000
@@ -0,0 +1,176 @@
+<macros>
+    <xml name="output_pdb_models">
+        <data name="model5" format="pdb" from_work_dir="output/alphafold/ranked_4.pdb" label="${tool.name} on ${on_string}: PDB ranked 4"/>
+        <data name="model4" format="pdb" from_work_dir="output/alphafold/ranked_3.pdb" label="${tool.name} on ${on_string}: PDB ranked 3"/>
+        <data name="model3" format="pdb" from_work_dir="output/alphafold/ranked_2.pdb" label="${tool.name} on ${on_string}: PDB ranked 2"/>
+        <data name="model2" format="pdb" from_work_dir="output/alphafold/ranked_1.pdb" label="${tool.name} on ${on_string}: PDB ranked 1"/>
+        <data name="model1" format="pdb" from_work_dir="output/alphafold/ranked_0.pdb" label="${tool.name} on ${on_string}: PDB ranked 0"/>
+    </xml>
+
+    <xml name="output_pae_csv">
+        <data
+            name="pae_ranked_4"
+            format="csv"
+            from_work_dir="output/alphafold/extra/pae_ranked_4.csv"
+            label="${tool.name} on ${on_string}: pae_ranked_4.csv"
+        >
+            <filter>outputs['pae_csv']</filter>
+            <filter>model_preset != "monomer"</filter>
+        </data>
+        <data
+            name="pae_ranked_3"
+            format="csv"
+            from_work_dir="output/alphafold/extra/pae_ranked_3.csv"
+            label="${tool.name} on ${on_string}: pae_ranked_3.csv"
+        >
+            <filter>outputs['pae_csv']</filter>
+            <filter>model_preset != "monomer"</filter>
+        </data>
+        <data
+            name="pae_ranked_2"
+            format="csv"
+            from_work_dir="output/alphafold/extra/pae_ranked_2.csv"
+            label="${tool.name} on ${on_string}: pae_ranked_2.csv"
+        >
+            <filter>outputs['pae_csv']</filter>
+            <filter>model_preset != "monomer"</filter>
+        </data>
+        <data
+            name="pae_ranked_1"
+            format="csv"
+            from_work_dir="output/alphafold/extra/pae_ranked_1.csv"
+            label="${tool.name} on ${on_string}: pae_ranked_1.csv"
+        >
+            <filter>outputs['pae_csv']</filter>
+            <filter>model_preset != "monomer"</filter>
+        </data>
+        <data
+            name="pae_ranked_0"
+            format="csv"
+            from_work_dir="output/alphafold/extra/pae_ranked_0.csv"
+            label="${tool.name} on ${on_string}: pae_ranked_0.csv"
+        >
+            <filter>outputs['pae_csv']</filter>
+            <filter>model_preset != "monomer"</filter>
+        </data>
+    </xml>
+
+    <xml name="output_pickles">
+        <data
+            name="output_ranked_4_pkl"
+            format="binary"
+            from_work_dir="output/alphafold/extra/ranked_4.pkl"
+            label="${tool.name} on ${on_string}: ranked_4.pkl"
+        >
+            <filter>outputs['model_pkls']</filter>
+        </data>
+        <data
+            name="output_ranked_3_pkl"
+            format="binary"
+            from_work_dir="output/alphafold/extra/ranked_3.pkl"
+            label="${tool.name} on ${on_string}: ranked_3.pkl"
+        >
+            <filter>outputs['model_pkls']</filter>
+        </data>
+        <data
+            name="output_ranked_2_pkl"
+            format="binary"
+            from_work_dir="output/alphafold/extra/ranked_2.pkl"
+            label="${tool.name} on ${on_string}: ranked_2.pkl"
+        >
+            <filter>outputs['model_pkls']</filter>
+        </data>
+        <data
+            name="output_ranked_1_pkl"
+            format="binary"
+            from_work_dir="output/alphafold/extra/ranked_1.pkl"
+            label="${tool.name} on ${on_string}: ranked_1.pkl"
+        >
+            <filter>outputs['model_pkls']</filter>
+        </data>
+        <data
+            name="output_ranked_0_pkl"
+            format="binary"
+            from_work_dir="output/alphafold/extra/ranked_0.pkl"
+            label="${tool.name} on ${on_string}: ranked_0.pkl"
+        >
+            <filter>outputs['model_pkls']</filter>
+        </data>
+    </xml>
+
+    <xml name="output_plots">
+        <data
+            name="plot_ranked_4"
+            format="png"
+            from_work_dir="output/alphafold/extra/ranked_4.png"
+            label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 4"
+        >
+            <filter>outputs['plots']</filter>
+        </data>
+        <data
+            name="plot_ranked_3"
+            format="png"
+            from_work_dir="output/alphafold/extra/ranked_3.png"
+            label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 3"
+        >
+            <filter>outputs['plots']</filter>
+        </data>
+        <data
+            name="plot_ranked_2"
+            format="png"
+            from_work_dir="output/alphafold/extra/ranked_2.png"
+            label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 2"
+        >
+            <filter>outputs['plots']</filter>
+        </data>
+        <data
+            name="plot_ranked_1"
+            format="png"
+            from_work_dir="output/alphafold/extra/ranked_1.png"
+            label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 1"
+        >
+            <filter>outputs['plots']</filter>
+        </data>
+        <data
+            name="plot_ranked_0"
+            format="png"
+            from_work_dir="output/alphafold/extra/ranked_0.png"
+            label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 0"
+        >
+            <filter>outputs['plots']</filter>
+        </data>
+    </xml>
+
+    <xml name="output_confidence_scores">
+        <data
+            name="output_confidence_scores"
+            format="tabular"
+            from_work_dir="output/alphafold/extra/model_confidence_scores.tsv"
+            label="${tool.name} on ${on_string}: Model confidence scores"
+        >
+            <filter>outputs['confidence_scores']</filter>
+        </data>
+    </xml>
+
+    <xml name="output_plddts">
+        <data
+            name="output_plddts"
+            format="tabular"
+            from_work_dir="output/alphafold/extra/plddts.tsv"
+            label="${tool.name} on ${on_string}: Per-residue confidence scores (plddts)"
+        >
+            <filter>outputs['plddts']</filter>
+        </data>
+    </xml>
+
+    <xml name="output_relax_json">
+        <data
+            name="output_relax_json"
+            format="json"
+            from_work_dir="output/alphafold/extra/relax_metrics_ranked.json"
+            label="${tool.name} on ${on_string}: relax_metrics_ranked.json"
+        >
+            <filter>outputs['relax_json']</filter>
+        </data>
+    </xml>
+</macros>