Mercurial > repos > galaxy-australia > alphafold2

diff validate_fasta.py @ 15:a58f7eb0df2c draft

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planemo upload for repository https://github.com/usegalaxy-au/tools-au commit fd45a857a71358e7e5375dcfb5043cdc8560c5a5
author galaxy-australia
date Fri, 10 Mar 2023 02:48:07 +0000
parents d00e15139065
children
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--- a/validate_fasta.py	Tue Feb 28 01:15:42 2023 +0000
+++ b/validate_fasta.py	Fri Mar 10 02:48:07 2023 +0000
@@ -205,6 +205,11 @@
         for fas in clean_fastas:
             fw.write(fas)
 
+        sys.stderr.write("Validated FASTA sequence(s):\n\n")
+        for fas in clean_fastas:
+            sys.stderr.write(fas.header + '\n')
+            sys.stderr.write(fas.aa_seq + '\n\n')
+
     except ValueError as exc:
         sys.stderr.write(f"{exc}\n\n")
         raise exc