Mercurial > repos > galaxy-australia > alphafold2
diff README.rst @ 8:ca90d17ff51b draft
"planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 03537aada92b5fff565ff48dd47c81462c5df47e"
author | galaxy-australia |
---|---|
date | Fri, 19 Aug 2022 00:29:16 +0000 |
parents | eb085b3dbaf8 |
children | 81d1ef460bb3 |
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--- a/README.rst Tue Apr 19 00:39:29 2022 +0000 +++ b/README.rst Fri Aug 19 00:29:16 2022 +0000 @@ -9,7 +9,9 @@ This document is designed to provide details on the compute environment required for Alphafold operation, and the Galaxy job destination -settings to run the wrapper. +settings to run the wrapper. We strongly suggest reading this entire document +to ensure that your setup is compatible with the hardware that you are +deploying to. For full details on Alphafold requirements, see https://github.com/deepmind/alphafold. @@ -163,11 +165,9 @@ A few parameters can be customized with the use of environment variables set in the job destination: - ``ALPHAFOLD_DB``: path to the reference database root (default ``/data``) -- ``ALPHAFOLD_AA_LENGTH_MIN``: minimum accepted sequence length (default ``30``) -- ``ALPHAFOLD_AA_LENGTH_MAX``: maximum accepted sequence length (default ``2000``) - -For the last two, these could be set to ``0`` and ``50000`` respectively to remove the valiation entirely. - +- ``ALPHAFOLD_USE_GPU [True/False]``: set to ``False`` to disable GPU dependency (defaults to ``True``) +- ``ALPHAFOLD_AA_LENGTH_MIN``: minimum accepted sequence length (default ``0``) +- ``ALPHAFOLD_AA_LENGTH_MAX``: maximum accepted sequence length (default ``0`` - no validation) Closing ~~~~~~~