Mercurial > repos > galaxy-australia > alphafold2
view macro_output.xml @ 18:e4a053d67e24 draft
planemo upload for repository https://github.com/usegalaxy-au/tools-au commit ef97511263dcac81f8563ae6a98d1db2400fcf1d
author | galaxy-australia |
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date | Fri, 01 Sep 2023 00:09:46 +0000 |
parents | a58f7eb0df2c |
children | 6ab1a261520a |
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<macros> <xml name="output_pdb_models"> <data name="model5" format="pdb" from_work_dir="output/alphafold/ranked_4.pdb" label="${tool.name} on ${on_string}: PDB ranked 4"/> <data name="model4" format="pdb" from_work_dir="output/alphafold/ranked_3.pdb" label="${tool.name} on ${on_string}: PDB ranked 3"/> <data name="model3" format="pdb" from_work_dir="output/alphafold/ranked_2.pdb" label="${tool.name} on ${on_string}: PDB ranked 2"/> <data name="model2" format="pdb" from_work_dir="output/alphafold/ranked_1.pdb" label="${tool.name} on ${on_string}: PDB ranked 1"/> <data name="model1" format="pdb" from_work_dir="output/alphafold/ranked_0.pdb" label="${tool.name} on ${on_string}: PDB ranked 0"/> </xml> <xml name="output_pae_csv"> <data name="pae_ranked_4" format="csv" from_work_dir="output/alphafold/extra/pae_ranked_4.csv" label="${tool.name} on ${on_string}: pae_ranked_4.csv" > <filter>outputs['pae_csv']</filter> <filter>model_preset != "monomer"</filter> </data> <data name="pae_ranked_3" format="csv" from_work_dir="output/alphafold/extra/pae_ranked_3.csv" label="${tool.name} on ${on_string}: pae_ranked_3.csv" > <filter>outputs['pae_csv']</filter> <filter>model_preset != "monomer"</filter> </data> <data name="pae_ranked_2" format="csv" from_work_dir="output/alphafold/extra/pae_ranked_2.csv" label="${tool.name} on ${on_string}: pae_ranked_2.csv" > <filter>outputs['pae_csv']</filter> <filter>model_preset != "monomer"</filter> </data> <data name="pae_ranked_1" format="csv" from_work_dir="output/alphafold/extra/pae_ranked_1.csv" label="${tool.name} on ${on_string}: pae_ranked_1.csv" > <filter>outputs['pae_csv']</filter> <filter>model_preset != "monomer"</filter> </data> <data name="pae_ranked_0" format="csv" from_work_dir="output/alphafold/extra/pae_ranked_0.csv" label="${tool.name} on ${on_string}: pae_ranked_0.csv" > <filter>outputs['pae_csv']</filter> <filter>model_preset != "monomer"</filter> </data> </xml> <xml name="output_pickles"> <data name="output_ranked_4_pkl" format="binary" from_work_dir="output/alphafold/extra/ranked_4.pkl" label="${tool.name} on ${on_string}: ranked_4.pkl" > <filter>outputs['model_pkls']</filter> </data> <data name="output_ranked_3_pkl" format="binary" from_work_dir="output/alphafold/extra/ranked_3.pkl" label="${tool.name} on ${on_string}: ranked_3.pkl" > <filter>outputs['model_pkls']</filter> </data> <data name="output_ranked_2_pkl" format="binary" from_work_dir="output/alphafold/extra/ranked_2.pkl" label="${tool.name} on ${on_string}: ranked_2.pkl" > <filter>outputs['model_pkls']</filter> </data> <data name="output_ranked_1_pkl" format="binary" from_work_dir="output/alphafold/extra/ranked_1.pkl" label="${tool.name} on ${on_string}: ranked_1.pkl" > <filter>outputs['model_pkls']</filter> </data> <data name="output_ranked_0_pkl" format="binary" from_work_dir="output/alphafold/extra/ranked_0.pkl" label="${tool.name} on ${on_string}: ranked_0.pkl" > <filter>outputs['model_pkls']</filter> </data> </xml> <xml name="output_plots"> <data name="plot_ranked_4" format="png" from_work_dir="output/alphafold/extra/ranked_4.png" label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 4" > <filter>outputs['plots']</filter> </data> <data name="plot_ranked_3" format="png" from_work_dir="output/alphafold/extra/ranked_3.png" label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 3" > <filter>outputs['plots']</filter> </data> <data name="plot_ranked_2" format="png" from_work_dir="output/alphafold/extra/ranked_2.png" label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 2" > <filter>outputs['plots']</filter> </data> <data name="plot_ranked_1" format="png" from_work_dir="output/alphafold/extra/ranked_1.png" label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 1" > <filter>outputs['plots']</filter> </data> <data name="plot_ranked_0" format="png" from_work_dir="output/alphafold/extra/ranked_0.png" label="${tool.name} on ${on_string}: pLDDT/PAE plot ranked 0" > <filter>outputs['plots']</filter> </data> </xml> <xml name="output_confidence_scores"> <data name="output_confidence_scores" format="tabular" from_work_dir="output/alphafold/extra/model_confidence_scores.tsv" label="${tool.name} on ${on_string}: Model confidence scores" > <filter>outputs['confidence_scores']</filter> </data> </xml> <xml name="output_plddts"> <data name="output_plddts" format="tabular" from_work_dir="output/alphafold/extra/plddts.tsv" label="${tool.name} on ${on_string}: Per-residue confidence scores (plddts)" > <filter>outputs['plddts']</filter> </data> </xml> <xml name="output_relax_json"> <data name="output_relax_json" format="json" from_work_dir="output/alphafold/extra/relax_metrics_ranked.json" label="${tool.name} on ${on_string}: relax_metrics_ranked.json" > <filter>outputs['relax_json']</filter> </data> </xml> </macros>