# HG changeset patch
# User galaxy-australia
# Date 1693526986 0
# Node ID e4a053d67e246bd2d1af0a04a21d25a0239398c5
# Parent  5b85006245f3b1d0e575e5571dd9138c9d256486
planemo upload for repository https://github.com/usegalaxy-au/tools-au commit ef97511263dcac81f8563ae6a98d1db2400fcf1d

diff -r 5b85006245f3 -r e4a053d67e24 alphafold.xml
--- a/alphafold.xml	Wed May 31 01:30:22 2023 +0000
+++ b/alphafold.xml	Fri Sep 01 00:09:46 2023 +0000
@@ -3,7 +3,7 @@
     <macros>
       <token name="@TOOL_VERSION@">2.3.1</token>
       <token name="@TOOL_MINOR_VERSION@">2.3</token>
-      <token name="@VERSION_SUFFIX@">3</token>
+      <token name="@VERSION_SUFFIX@">4</token>
       <import>macro_output.xml</import>
       <import>macro_test_output.xml</import>
     </macros>
diff -r 5b85006245f3 -r e4a053d67e24 scripts/validate_fasta.py
--- a/scripts/validate_fasta.py	Wed May 31 01:30:22 2023 +0000
+++ b/scripts/validate_fasta.py	Fri Sep 01 00:09:46 2023 +0000
@@ -6,6 +6,7 @@
 from typing import List
 
 MULTIMER_MAX_SEQUENCE_COUNT = 10
+STRIP_SEQUENCE_CHARS = ['\n', '\r', '\t', ' ']
 
 
 class Fasta:
@@ -67,6 +68,9 @@
                 fasta_count = len(self.fastas)
                 header = f'>sequence_{fasta_count}'
 
+            for char in STRIP_SEQUENCE_CHARS:
+                sequence = sequence.replace(char, '')
+
             # Create new Fasta
             self.fastas.append(Fasta(header, sequence))
 
@@ -109,7 +113,6 @@
                     'Multimer mode requires multiple input sequence.'
                     f' Only {fasta_count} sequences were detected in'
                     ' the provided file.')
-                self.fasta_list = self.fasta_list
 
             elif fasta_count > MULTIMER_MAX_SEQUENCE_COUNT:
                 sys.stderr.write(