Mercurial > repos > galaxy-australia > blobtools

diff macros.xml @ 0:234b3e869b16 draft default tip

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"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
author galaxy-australia
date Wed, 26 Oct 2022 06:54:04 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed Oct 26 06:54:04 2022 +0000
@@ -0,0 +1,30 @@
+<macros>
+    <xml name="requirements">
+	   <requirements>
+		   <requirement type="package" version="1.1.1">blobtools</requirement>
+		   <requirement type="package" version="3.2.2">matplotlib</requirement>
+           </requirements>
+   </xml>
+   <xml name="stdio">
+     <stdio>
+        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
+        <exit_code range="1:"  level="fatal" description="Error" />
+     </stdio>
+   </xml>
+  <xml name="version_command">
+      <version_command><![CDATA[
+	      blobtools --version 2>&1 | head -1       
+      ]]></version_command>
+  </xml>
+  <xml name="macro_create_input">
+	  <param name="input_fasta" type="data" format="fasta" label="Sequence file"/>
+	  <param name="input_bam" type="data" format="bam" label="Alignment file"/>
+	  <param name="input_blast" type="data" format="tabular" label="Simplified Blast file"/>
+  </xml>
+  <xml name="macro_view_input">
+	  <param name="input_json" type="data" format="json" label="Json input file"/>
+  </xml>
+  <token name="@SET_TMP_DIR@">
+	export MPLCONFIGDIR="/tmp"
+  </token>
+</macros>