Mercurial > repos > galaxy-australia > cactus_cactus

view README.rst @ 0:85f68b344286 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
author galaxy-australia
date Mon, 04 Apr 2022 06:27:44 +0000
parents
children 8b67dd48fec1
line wrap: on
line source

Cactus
======

This suite contains a wrapper for the
`Cactus <github.com/comparativeGenomicsToolkit/cactus>`__ whole-genome
aligner and another wrapper for exporting the data it generates.

Requirements
------------

The developers provide an official Docker container. However, the Docker
container won’t run unless ``/etc/passwd`` is mounted (`see this
issue <https://github.com/ComparativeGenomicsToolkit/cactus/issues/677>`__).
Because of this, it is recommended to run Cactus using Singularity.

Cactus uses a lot of RAM. We have tested it on Galaxy using 24 GB of RAM
for a progressive alignment of three chromosome-level, 150 megabase
genomes.